Feature identity
- Identifier
- PaHa09g12670.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 615 bp
- Genomic location
- 9:37,647,952–37,653,973
- Strand
- −
Hass · mRNA
PaHa09g12670.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 615
- bp
- 9:37,647,952–37,653,973
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g12670
- eggNOG
- Preferred name: DI19-2 | Seed ortholog: 337451.A0A443PWY1 | COG: S | eggNOG OG: Di19_C@131567|A-1*, Di19_C@3193|G-3, zf-Di19@3398|Kd-15, zf-Di19@35493|X-6
- Gene Ontology
- GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005783 endoplasmic reticulum; GO:0009414 response to water deprivation; GO:0009507 chloroplast; GO:0009651 response to salt stress; GO:0009737 response to abscisic acid; GO:0009785 blue light signaling pathway; GO:0010161 red light signaling pathway; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:1990578 perinuclear endoplasmic reticulum membrane
- KEGG
- EC: ec:2.3.2.27 | KO: K22376 | BRITE: 00001, 01000, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g12670.1-protein
derives_frommRNAPaHa09g12670.1
mRNAPaHa09g12670.1
part_ofgenePaHa09g12670
CDS
part_ofPaHa09g12670.1-CDS-9-1787993825:37647952..37648054mRNAPaHa09g12670.1
CDS
part_ofPaHa09g12670.1-CDS-9-1787993825:37649231..37649490mRNAPaHa09g12670.1
CDS
part_ofPaHa09g12670.1-CDS-9-1787993825:37649767..37649805mRNAPaHa09g12670.1
CDS
part_ofPaHa09g12670.1-CDS-9-1787993825:37653638..37653780mRNAPaHa09g12670.1
CDS
part_ofPaHa09g12670.1-CDS-9-1787993825:37653904..37653973mRNAPaHa09g12670.1
exon
part_ofPaHa09g12670.1-exon-9-1787993825:37647952..37648054mRNAPaHa09g12670.1
exon
part_ofPaHa09g12670.1-exon-9-1787993825:37649231..37649490mRNAPaHa09g12670.1
exon
part_ofPaHa09g12670.1-exon-9-1787993825:37649767..37649805mRNAPaHa09g12670.1
exon
part_ofPaHa09g12670.1-exon-9-1787993825:37653638..37653780mRNAPaHa09g12670.1
exon
part_ofPaHa09g12670.1-exon-9-1787993825:37653904..37653973mRNAPaHa09g12670.1
