Feature identity
- Identifier
- PaHa09g12010.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,898 bp
- Genomic location
- 9:36,573,825–36,600,427
- Strand
- +
Hass · mRNA
PaHa09g12010.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,898
- bp
- 9:36,573,825–36,600,427
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g12010
- eggNOG
- Preferred name: CMTA5 | Seed ortholog: 337451.A0A3S3R6I7 | COG: S | eggNOG OG: Ank_2@131567|Mm-10, Ank_2@2759|BXW-16, Ank_2@3193|UbQ-27, CG-1@2759|A-1, CG-1@3193|AQ-8, CG-1@35493|P-5, IQ@131567|aD-16, IQ@35493|AUv-21
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005516 calmodulin binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009409 response to cold; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0070417 cellular response to cold
- KEGG
- KO: K21596 | Pathway: 01523, 03440, 04010, 04014, 04024, 04062, 04064, 04066, 04071, 04075, 04151, 04210, 04211, 04218, 04380, 04613, 04620, 04621, 04622, 04623, 04624, 04625, 04657, 04658, 04659, 04660, 04662, 04668, 04722, 04820, 04917, 04920, 04926, 04931, 04932, 04933, 04936, 05010, 05022, 05030, 05132, 05133, 05134, 05135, 05140, 05142, 05145, 05146, 05152, 05160, 05161, 05162, 05163, 05164, 05165, 05166, 05167, 05168, 05169, 05170, 05171, 05200, 05202, 05203, 05206, 05207, 05208, 05212, 05215, 05220, 05221, 05222, 05224, 05235, 05321, 05415, 05417, 05418 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g12010.1-protein
derives_frommRNAPaHa09g12010.1
mRNAPaHa09g12010.1
part_ofgenePaHa09g12010
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36573825..36573885mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36574940..36575065mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36575349..36575464mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36577162..36577250mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36584844..36584889mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36591583..36591772mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36592950..36593114mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36593179..36593237mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36593915..36594349mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36595080..36595789mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36598460..36599006mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36599146..36599457mRNAPaHa09g12010.1
CDS
part_ofPaHa09g12010.1-CDS-9-1787993825:36600386..36600427mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36573825..36573885mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36574940..36575065mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36575349..36575464mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36577162..36577250mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36584844..36584889mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36591583..36591772mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36592950..36593114mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36593179..36593237mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36593915..36594349mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36595080..36595789mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36598460..36599006mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36599146..36599457mRNAPaHa09g12010.1
exon
part_ofPaHa09g12010.1-exon-9-1787993825:36600386..36600427mRNAPaHa09g12010.1
