Hass · mRNA

PaHa09g11830.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,316
bp
9:36,071,109–36,087,543
genomic location
Record overview

Feature identity

Identifier
PaHa09g11830.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,316 bp
Genomic location
9:36,071,109–36,087,543
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: RH40 | Seed ortholog: 337451.A0A443NCW9 | COG: S | eggNOG OG: DEAD@131567|Fpr-34, DEAD@2759|PnE-44, DEAD@3193|rzO-55, Helicase_C|VOIY5N@2759, WW@131567|TR-14
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000325 plant-type vacuole; GO:0000413 protein peptidyl-prolyl isomerization; GO:0000993 RNA polymerase II complex binding; GO:0001666 response to hypoxia; GO:0001934 positive regulation of protein phosphorylation; GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0003724 RNA helicase activity; GO:0003729 mRNA binding; GO:0003755 peptidyl-prolyl cis-trans isomerase activity; GO:0003774 cytoskeletal motor activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005634 nucleus; GO:0006139 nucleobase-containing compound metabolic process; GO:0006364 rRNA processing; GO:0006369 termination of RNA polymerase II transcription; GO:0007088 regulation of mitotic nuclear division; GO:0007266 Rho protein signal transduction; GO:0007276 gamete generation; GO:0007346 regulation of mitotic cell cycle; GO:0008013 beta-catenin binding; GO:0008045 motor neuron axon guidance; GO:0008432 JUN kinase binding; GO:0009267 cellular response to starvation; GO:0010468 regulation of gene expression; GO:0016070 RNA metabolic process; GO:0016859 cis-trans isomerase activity; GO:0016887 ATP hydrolysis activity; GO:0030182 neuron differentiation; GO:0030447 filamentous growth; GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway; GO:0031398 positive regulation of protein ubiquitination; GO:0031434 mitogen-activated protein kinase kinase binding; GO:0031647 regulation of protein stability; GO:0031648 protein destabilization; GO:0032465 regulation of cytokinesis; GO:0032794 GTPase activating protein binding; GO:0034605 cellular response to heat; GO:0036168 filamentous growth of a population of unicellular organisms in response to heat; GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0042127 regulation of cell population proliferation; GO:0042177 negative regulation of protein catabolic process; GO:0043524 negative regulation of neuron apoptotic process; GO:0043525 positive regulation of neuron apoptotic process; GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048156 tau protein binding; GO:0050808 synapse organization; GO:0050815 phosphoserine residue binding; GO:0050816 phosphothreonine residue binding; GO:0050821 protein stabilization; GO:0051219 phosphoprotein binding; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0060392 negative regulation of SMAD protein signal transduction; GO:0061051 positive regulation of cell growth involved in cardiac muscle cell development; GO:0070373 negative regulation of ERK1 and ERK2 cascade; GO:0070585 protein localization to mitochondrion; GO:0071456 cellular response to hypoxia; GO:0090263 positive regulation of canonical Wnt signaling pathway; GO:0140252 regulation protein catabolic process at postsynapse; GO:0140297 DNA-binding transcription factor binding; GO:0140463 chromatin-protein adaptor activity; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway; GO:1900180 regulation of protein localization to nucleus; GO:1902229 regulation of intrinsic apoptotic signaling pathway in response to DNA damage; GO:1902430 negative regulation of amyloid-beta formation; GO:1903444 negative regulation of brown fat cell differentiation; GO:1904059 regulation of locomotor rhythm; GO:1990757 ubiquitin ligase activator activity; GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process; GO:2000146 negative regulation of cell motility; GO:2000749 positive regulation of rDNA heterochromatin formation
KEGG
EC: ec:5.6.2.7 | KO: K12823 | Pathway: 03040 | BRITE: 00001, 01000, 03009, 03041
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa09g11830.1-CDS-9-1787993825:36071109..36071282
part_of
CDSPaHa09g11830.1-CDS-9-1787993825:36071715..36071945
part_of
CDSPaHa09g11830.1-CDS-9-1787993825:36075608..36075676
part_of
CDSPaHa09g11830.1-CDS-9-1787993825:36076267..36076536
part_of
CDSPaHa09g11830.1-CDS-9-1787993825:36080623..36080973
part_of
CDSPaHa09g11830.1-CDS-9-1787993825:36084077..36084354
part_of
CDSPaHa09g11830.1-CDS-9-1787993825:36086601..36087543
part_of
exonPaHa09g11830.1-exon-9-1787993825:36071109..36071282
part_of
exonPaHa09g11830.1-exon-9-1787993825:36071715..36071945
part_of
exonPaHa09g11830.1-exon-9-1787993825:36075608..36075676
part_of
exonPaHa09g11830.1-exon-9-1787993825:36076267..36076536
part_of
exonPaHa09g11830.1-exon-9-1787993825:36080623..36080973
part_of
exonPaHa09g11830.1-exon-9-1787993825:36084077..36084354
part_of
exonPaHa09g11830.1-exon-9-1787993825:36086601..36087543
part_of