Feature identity
- Identifier
- PaHa09g11770.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 909 bp
- Genomic location
- 9:35,982,337–35,994,632
- Strand
- −
Hass · mRNA
PaHa09g11770.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 909
- bp
- 9:35,982,337–35,994,632
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g11770
- eggNOG
- Preferred name: LOC101503374 | Seed ortholog: 337451.A0A3S3NMS7 | COG: S | eggNOG OG: TFIIA_gamma_C@2759|A-1, TFIIA_gamma_N@2759|A-1
- Gene Ontology
- GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding; GO:0001091 RNA polymerase II general transcription initiation factor binding; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0008150 biological_process; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0017025 TBP-class protein binding; GO:0042803 protein homodimerization activity; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046982 protein heterodimerization activity; GO:0051123 RNA polymerase II preinitiation complex assembly; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
- KEGG
- KO: K03123 | Pathway: 03022 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g11770.1-protein
derives_frommRNAPaHa09g11770.1
mRNAPaHa09g11770.1
part_ofgenePaHa09g11770
CDS
part_ofPaHa09g11770.1-CDS-9-1787993825:35982337..35982726mRNAPaHa09g11770.1
CDS
part_ofPaHa09g11770.1-CDS-9-1787993825:35983671..35983769mRNAPaHa09g11770.1
CDS
part_ofPaHa09g11770.1-CDS-9-1787993825:35988795..35988845mRNAPaHa09g11770.1
CDS
part_ofPaHa09g11770.1-CDS-9-1787993825:35988959..35989100mRNAPaHa09g11770.1
CDS
part_ofPaHa09g11770.1-CDS-9-1787993825:35989249..35989340mRNAPaHa09g11770.1
CDS
part_ofPaHa09g11770.1-CDS-9-1787993825:35994498..35994632mRNAPaHa09g11770.1
exon
part_ofPaHa09g11770.1-exon-9-1787993825:35982337..35982726mRNAPaHa09g11770.1
exon
part_ofPaHa09g11770.1-exon-9-1787993825:35983671..35983769mRNAPaHa09g11770.1
exon
part_ofPaHa09g11770.1-exon-9-1787993825:35988795..35988845mRNAPaHa09g11770.1
exon
part_ofPaHa09g11770.1-exon-9-1787993825:35988959..35989100mRNAPaHa09g11770.1
exon
part_ofPaHa09g11770.1-exon-9-1787993825:35989249..35989340mRNAPaHa09g11770.1
exon
part_ofPaHa09g11770.1-exon-9-1787993825:35994498..35994632mRNAPaHa09g11770.1
