Feature identity
- Identifier
- PaHa09g10130.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,074 bp
- Genomic location
- 9:32,385,864–32,391,738
- Strand
- +
Hass · mRNA
PaHa09g10130.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,074
- bp
- 9:32,385,864–32,391,738
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g10130
- eggNOG
- Preferred name: PHL2 | Seed ortholog: 337451.A0A3S3NH59 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@3193|Z-8, Myb_CC_LHEQLE@33090|S-7, Myb_CC_LHEQLE@3398|By-13, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@3193|Bsq-33, Myb_DNA-binding@33090|Apr-30, Myb_DNA-binding@3398|CtU-35
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0007165 signal transduction; GO:0007623 circadian rhythm; GO:0009658 chloroplast organization; GO:0009910 negative regulation of flower development; GO:0010380 regulation of chlorophyll biosynthetic process; GO:0010638 positive regulation of organelle organization; GO:0045893 positive regulation of DNA-templated transcription; GO:1900056 negative regulation of leaf senescence
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g10130.1-protein
derives_frommRNAPaHa09g10130.1
mRNAPaHa09g10130.1
part_ofgenePaHa09g10130
CDS
part_ofPaHa09g10130.1-CDS-9-1787993825:32385864..32386047mRNAPaHa09g10130.1
CDS
part_ofPaHa09g10130.1-CDS-9-1787993825:32388099..32388175mRNAPaHa09g10130.1
CDS
part_ofPaHa09g10130.1-CDS-9-1787993825:32389438..32389492mRNAPaHa09g10130.1
CDS
part_ofPaHa09g10130.1-CDS-9-1787993825:32390311..32390380mRNAPaHa09g10130.1
CDS
part_ofPaHa09g10130.1-CDS-9-1787993825:32390472..32390541mRNAPaHa09g10130.1
CDS
part_ofPaHa09g10130.1-CDS-9-1787993825:32391121..32391738mRNAPaHa09g10130.1
exon
part_ofPaHa09g10130.1-exon-9-1787993825:32385864..32386047mRNAPaHa09g10130.1
exon
part_ofPaHa09g10130.1-exon-9-1787993825:32388099..32388175mRNAPaHa09g10130.1
exon
part_ofPaHa09g10130.1-exon-9-1787993825:32389438..32389492mRNAPaHa09g10130.1
exon
part_ofPaHa09g10130.1-exon-9-1787993825:32390311..32390380mRNAPaHa09g10130.1
exon
part_ofPaHa09g10130.1-exon-9-1787993825:32390472..32390541mRNAPaHa09g10130.1
exon
part_ofPaHa09g10130.1-exon-9-1787993825:32391121..32391738mRNAPaHa09g10130.1
