Hass · mRNA

PaHa09g10040.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,847
bp
9:32,161,569–32,205,798
genomic location
Record overview

Feature identity

Identifier
PaHa09g10040.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,847 bp
Genomic location
9:32,161,569–32,205,798
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: TAF4B | Seed ortholog: 337451.A0A443PWE9 | COG: S | eggNOG OG: RST@131567|A-1*, RST@3193|O-5, TAF4@2759|A-1, TAF4@3193|LW-16
Gene Ontology
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding; GO:0001046 core promoter sequence-specific DNA binding; GO:0001541 ovarian follicle development; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006282 regulation of DNA repair; GO:0006351 DNA-templated transcription; GO:0006352 DNA-templated transcription initiation; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0008340 determination of adult lifespan; GO:0009506 plasmodesma; GO:0009792 embryo development ending in birth or egg hatching; GO:0009794 regulation of mitotic cell cycle, embryonic; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0017162 aryl hydrocarbon receptor binding; GO:0042789 mRNA transcription by RNA polymerase II; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0051059 NF-kappaB binding; GO:0051123 RNA polymerase II preinitiation complex assembly; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0071466 cellular response to xenobiotic stimulus; GO:2000648 positive regulation of stem cell proliferation
KEGG
KO: K03129 | Pathway: 03022 | BRITE: 00001, 03021, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa09g10040.1-CDS-9-1787993825:32161569..32161610
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32161730..32161847
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32162492..32163033
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32163478..32163573
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32164846..32165844
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32175072..32175202
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32175301..32175388
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32177480..32177615
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32177744..32177799
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32177886..32177942
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32180548..32180691
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32196968..32197033
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32197664..32197928
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32204981..32205023
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32205137..32205157
part_of
CDSPaHa09g10040.1-CDS-9-1787993825:32205756..32205798
part_of
exonPaHa09g10040.1-exon-9-1787993825:32161569..32161610
part_of
exonPaHa09g10040.1-exon-9-1787993825:32161730..32161847
part_of
exonPaHa09g10040.1-exon-9-1787993825:32162492..32163033
part_of
exonPaHa09g10040.1-exon-9-1787993825:32163478..32163573
part_of
exonPaHa09g10040.1-exon-9-1787993825:32164846..32165844
part_of
exonPaHa09g10040.1-exon-9-1787993825:32175072..32175202
part_of
exonPaHa09g10040.1-exon-9-1787993825:32175301..32175388
part_of
exonPaHa09g10040.1-exon-9-1787993825:32177480..32177615
part_of
exonPaHa09g10040.1-exon-9-1787993825:32177744..32177799
part_of
exonPaHa09g10040.1-exon-9-1787993825:32177886..32177942
part_of
exonPaHa09g10040.1-exon-9-1787993825:32180548..32180691
part_of
exonPaHa09g10040.1-exon-9-1787993825:32196968..32197033
part_of
exonPaHa09g10040.1-exon-9-1787993825:32197664..32197928
part_of
exonPaHa09g10040.1-exon-9-1787993825:32204981..32205023
part_of
exonPaHa09g10040.1-exon-9-1787993825:32205137..32205157
part_of
exonPaHa09g10040.1-exon-9-1787993825:32205756..32205798
part_of