Feature identity
- Identifier
- PaHa09g08130.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,055 bp
- Genomic location
- 9:23,232,199–23,244,316
- Strand
- −
Hass · mRNA
PaHa09g08130.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,055
- bp
- 9:23,232,199–23,244,316
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g08130
- eggNOG
- Preferred name: LOC107829795 | Seed ortholog: 337451.A0A443P217 | eggNOG OG: tRNA-synt_1c@131567|Cu-11, tRNA-synt_1c_C@131567|B-2
- Gene Ontology
- GO:0002181 cytoplasmic translation; GO:0003729 mRNA binding; GO:0004818 glutamate-tRNA ligase activity; GO:0004827 proline-tRNA ligase activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005829 cytosol; GO:0006418 tRNA aminoacylation for protein translation; GO:0006424 glutamyl-tRNA aminoacylation; GO:0006431 methionyl-tRNA aminoacylation; GO:0006433 prolyl-tRNA aminoacylation; GO:0008270 zinc ion binding; GO:0009507 chloroplast; GO:0009536 plastid; GO:0017148 negative regulation of translation; GO:0032869 cellular response to insulin stimulus; GO:0035613 RNA stem-loop binding; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0051020 GTPase binding; GO:0071346 cellular response to type II interferon; GO:0140212 regulation of long-chain fatty acid import into cell; GO:1901194 negative regulation of formation of translation preinitiation complex; GO:1990825 sequence-specific mRNA binding
- KEGG
- EC: ec:6.1.1.17 | KO: K01885 | Pathway: 00860, 00970, 01100, 01110, 01240 | Module: M00121 | BRITE: 00001, 01000, 01007, 01613, 02048, 03016
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g08130.1-protein
derives_frommRNAPaHa09g08130.1
mRNAPaHa09g08130.1
part_ofgenePaHa09g08130
CDS
part_ofPaHa09g08130.1-CDS-9-1787993825:23232199..23232417mRNAPaHa09g08130.1
CDS
part_ofPaHa09g08130.1-CDS-9-1787993825:23241068..23241535mRNAPaHa09g08130.1
CDS
part_ofPaHa09g08130.1-CDS-9-1787993825:23241674..23241942mRNAPaHa09g08130.1
CDS
part_ofPaHa09g08130.1-CDS-9-1787993825:23242090..23242809mRNAPaHa09g08130.1
CDS
part_ofPaHa09g08130.1-CDS-9-1787993825:23242982..23243135mRNAPaHa09g08130.1
CDS
part_ofPaHa09g08130.1-CDS-9-1787993825:23243275..23243362mRNAPaHa09g08130.1
CDS
part_ofPaHa09g08130.1-CDS-9-1787993825:23244180..23244316mRNAPaHa09g08130.1
exon
part_ofPaHa09g08130.1-exon-9-1787993825:23232199..23232417mRNAPaHa09g08130.1
exon
part_ofPaHa09g08130.1-exon-9-1787993825:23241068..23241535mRNAPaHa09g08130.1
exon
part_ofPaHa09g08130.1-exon-9-1787993825:23241674..23241942mRNAPaHa09g08130.1
exon
part_ofPaHa09g08130.1-exon-9-1787993825:23242090..23242809mRNAPaHa09g08130.1
exon
part_ofPaHa09g08130.1-exon-9-1787993825:23242982..23243135mRNAPaHa09g08130.1
exon
part_ofPaHa09g08130.1-exon-9-1787993825:23243275..23243362mRNAPaHa09g08130.1
exon
part_ofPaHa09g08130.1-exon-9-1787993825:23244180..23244316mRNAPaHa09g08130.1
