Hass · mRNA

PaHa09g01860.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,389
bp
9:3,657,336–3,666,087
genomic location
Record overview

Feature identity

Identifier
PaHa09g01860.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,389 bp
Genomic location
9:3,657,336–3,666,087
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: CBP60B | Seed ortholog: 337451.A0A443PUZ2 | COG: S | eggNOG OG: Calmod_bind_M@131567|A-1*, Calmod_bind_M@35493|G-3!, Calmodulin_bind@131567|A-1*, Calmodulin_bind@33090|O-4!
Gene Ontology
GO:0002229 defense response to oomycetes; GO:0002237 response to molecule of bacterial origin; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005516 calmodulin binding; GO:0005634 nucleus; GO:0005739 mitochondrion; GO:0006355 regulation of DNA-templated transcription; GO:0009507 chloroplast; GO:0009617 response to bacterium; GO:0009620 response to fungus; GO:0009697 salicylic acid biosynthetic process; GO:0009789 positive regulation of abscisic acid-activated signaling pathway; GO:0010112 regulation of systemic acquired resistance; GO:0010224 response to UV-B; GO:0042742 defense response to bacterium; GO:0043565 sequence-specific DNA binding; GO:0071219 cellular response to molecule of bacterial origin; GO:0071456 cellular response to hypoxia; GO:0080142 regulation of salicylic acid biosynthetic process; GO:0098542 defense response to other organism; GO:1900425 negative regulation of defense response to bacterium; GO:1900426 positive regulation of defense response to bacterium; GO:1902584 positive regulation of response to water deprivation
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa09g01860.1-CDS-9-1787993825:3657336..3657409
part_of
CDSPaHa09g01860.1-CDS-9-1787993825:3657644..3657734
part_of
CDSPaHa09g01860.1-CDS-9-1787993825:3658912..3658955
part_of
CDSPaHa09g01860.1-CDS-9-1787993825:3659408..3659871
part_of
CDSPaHa09g01860.1-CDS-9-1787993825:3660816..3660976
part_of
CDSPaHa09g01860.1-CDS-9-1787993825:3662777..3662951
part_of
CDSPaHa09g01860.1-CDS-9-1787993825:3665708..3666087
part_of
exonPaHa09g01860.1-exon-9-1787993825:3657336..3657409
part_of
exonPaHa09g01860.1-exon-9-1787993825:3657644..3657734
part_of
exonPaHa09g01860.1-exon-9-1787993825:3658912..3658955
part_of
exonPaHa09g01860.1-exon-9-1787993825:3659408..3659871
part_of
exonPaHa09g01860.1-exon-9-1787993825:3660816..3660976
part_of
exonPaHa09g01860.1-exon-9-1787993825:3662777..3662951
part_of
exonPaHa09g01860.1-exon-9-1787993825:3665708..3666087
part_of