Feature identity
- Identifier
- PaHa09g01850.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,125 bp
- Genomic location
- 9:3,633,048–3,656,566
- Strand
- −
Hass · mRNA
PaHa09g01850.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,125
- bp
- 9:3,633,048–3,656,566
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g01850
- eggNOG
- Preferred name: CBP60B | Seed ortholog: 337451.A0A443PUZ2 | COG: S | eggNOG OG: Calmod_bind_M@131567|A-1*, Calmod_bind_M@35493|G-3!, Calmodulin_bind@131567|A-1*, Calmodulin_bind@33090|O-4!
- Gene Ontology
- GO:0002229 defense response to oomycetes; GO:0002237 response to molecule of bacterial origin; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005516 calmodulin binding; GO:0005634 nucleus; GO:0005739 mitochondrion; GO:0006355 regulation of DNA-templated transcription; GO:0009507 chloroplast; GO:0009617 response to bacterium; GO:0009620 response to fungus; GO:0009697 salicylic acid biosynthetic process; GO:0009789 positive regulation of abscisic acid-activated signaling pathway; GO:0010112 regulation of systemic acquired resistance; GO:0010224 response to UV-B; GO:0042742 defense response to bacterium; GO:0043565 sequence-specific DNA binding; GO:0071219 cellular response to molecule of bacterial origin; GO:0071456 cellular response to hypoxia; GO:0080142 regulation of salicylic acid biosynthetic process; GO:0098542 defense response to other organism; GO:1900425 negative regulation of defense response to bacterium; GO:1900426 positive regulation of defense response to bacterium; GO:1902584 positive regulation of response to water deprivation
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g01850.1-protein
derives_frommRNAPaHa09g01850.1
mRNAPaHa09g01850.1
part_ofgenePaHa09g01850
CDS
part_ofPaHa09g01850.1-CDS-9-1787993825:3633048..3633236mRNAPaHa09g01850.1
CDS
part_ofPaHa09g01850.1-CDS-9-1787993825:3635992..3636195mRNAPaHa09g01850.1
CDS
part_ofPaHa09g01850.1-CDS-9-1787993825:3636374..3636483mRNAPaHa09g01850.1
CDS
part_ofPaHa09g01850.1-CDS-9-1787993825:3636944..3637413mRNAPaHa09g01850.1
CDS
part_ofPaHa09g01850.1-CDS-9-1787993825:3637738..3637781mRNAPaHa09g01850.1
CDS
part_ofPaHa09g01850.1-CDS-9-1787993825:3656366..3656450mRNAPaHa09g01850.1
CDS
part_ofPaHa09g01850.1-CDS-9-1787993825:3656544..3656566mRNAPaHa09g01850.1
exon
part_ofPaHa09g01850.1-exon-9-1787993825:3633048..3633236mRNAPaHa09g01850.1
exon
part_ofPaHa09g01850.1-exon-9-1787993825:3635992..3636195mRNAPaHa09g01850.1
exon
part_ofPaHa09g01850.1-exon-9-1787993825:3636374..3636483mRNAPaHa09g01850.1
exon
part_ofPaHa09g01850.1-exon-9-1787993825:3636944..3637413mRNAPaHa09g01850.1
exon
part_ofPaHa09g01850.1-exon-9-1787993825:3637738..3637781mRNAPaHa09g01850.1
exon
part_ofPaHa09g01850.1-exon-9-1787993825:3656366..3656450mRNAPaHa09g01850.1
exon
part_ofPaHa09g01850.1-exon-9-1787993825:3656544..3656566mRNAPaHa09g01850.1
