PaHa08g22610.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,109: bp
8:60,199,771–60,210,634: genomic location

Record overview

Feature identity

Identifier: PaHa08g22610.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 5,109 bp
Genomic location: 8:60,199,771–60,210,634
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa08g22610

eggNOG: Preferred name: LOC106780117 | Seed ortholog: 4432.A0A1U7ZMA9 | COG: S | eggNOG OG: GYF@131567|A-1*, GYF@2759|C-2, GYF@3398|dX-21, GYF@35493|Uz-19
Gene Ontology: GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005768 endosome; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005794 Golgi apparatus; GO:0005829 cytosol; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0007631 feeding behavior; GO:0008150 biological_process; GO:0008344 adult locomotory behavior; GO:0009791 post-embryonic development; GO:0010494 cytoplasmic stress granule; GO:0010506 regulation of autophagy; GO:0016020 membrane; GO:0016281 eukaryotic translation initiation factor 4F complex; GO:0016441 post-transcriptional gene silencing; GO:0017148 negative regulation of translation; GO:0021522 spinal cord motor neuron differentiation; GO:0031571 mitotic G1 DNA damage checkpoint signaling; GO:0031982 vesicle; GO:0032984 protein-containing complex disassembly; GO:0032991 protein-containing complex; GO:0035264 multicellular organism growth; GO:0043204 perikaryon; GO:0045296 cadherin binding; GO:0045947 negative regulation of translational initiation; GO:0046716 muscle cell cellular homeostasis; GO:0048009 insulin-like growth factor receptor signaling pathway; GO:0048873 homeostasis of number of cells within a tissue; GO:0050881 musculoskeletal movement; GO:0050885 neuromuscular process controlling balance; GO:0051664 nuclear pore localization; GO:0060090 molecular adaptor activity; GO:0060339 negative regulation of type I interferon-mediated signaling pathway; GO:0061157 mRNA destabilization; GO:0070050 neuron cellular homeostasis; GO:0070064 proline-rich region binding; GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system; GO:0072344 rescue of stalled cytosolic ribosome; GO:1990261 pre-mRNA catabolic process; GO:1990635 proximal dendrite
KEGG: KO: K18730 | BRITE: 00001, 03019

Biological context