Feature identity
- Identifier
- PaHa08g16240.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 999 bp
- Genomic location
- 8:48,985,649–48,998,554
- Strand
- +
Hass · mRNA
PaHa08g16240.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 999
- bp
- 8:48,985,649–48,998,554
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa08g16240
- eggNOG
- Preferred name: LOC110796294 | Seed ortholog: 337451.A0A3S3N6W6 | COG: S | eggNOG OG: Linker_histone@131221|Cc-10, Linker_histone@131567|C-2!, Linker_histone@3398|MR-15, Myb_DNA-binding@131567|uI-23, Myb_DNA-binding@2759|yX-24, Myb_DNA-binding@3193|CBo-33, Myb_DNA-binding@3398|DHO-35
- Gene Ontology
- GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0003691 double-stranded telomeric DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0006357 regulation of transcription by RNA polymerase II; GO:0032991 protein-containing complex; GO:0042803 protein homodimerization activity; GO:0043047 single-stranded telomeric DNA binding; GO:1990841 promoter-specific chromatin binding
- KEGG
- EC: ec:3.4.19.12 | KO: K09422 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa08g16240.1-protein
derives_frommRNAPaHa08g16240.1
mRNAPaHa08g16240.1
part_ofgenePaHa08g16240
CDS
part_ofPaHa08g16240.1-CDS-8-1787993825:48985649..48985656mRNAPaHa08g16240.1
CDS
part_ofPaHa08g16240.1-CDS-8-1787993825:48985744..48985767mRNAPaHa08g16240.1
CDS
part_ofPaHa08g16240.1-CDS-8-1787993825:48985924..48986137mRNAPaHa08g16240.1
CDS
part_ofPaHa08g16240.1-CDS-8-1787993825:48986425..48986645mRNAPaHa08g16240.1
CDS
part_ofPaHa08g16240.1-CDS-8-1787993825:48987657..48987741mRNAPaHa08g16240.1
CDS
part_ofPaHa08g16240.1-CDS-8-1787993825:48993481..48993564mRNAPaHa08g16240.1
CDS
part_ofPaHa08g16240.1-CDS-8-1787993825:48997931..48998278mRNAPaHa08g16240.1
CDS
part_ofPaHa08g16240.1-CDS-8-1787993825:48998540..48998554mRNAPaHa08g16240.1
exon
part_ofPaHa08g16240.1-exon-8-1787993825:48985649..48985656mRNAPaHa08g16240.1
exon
part_ofPaHa08g16240.1-exon-8-1787993825:48985744..48985767mRNAPaHa08g16240.1
exon
part_ofPaHa08g16240.1-exon-8-1787993825:48985924..48986137mRNAPaHa08g16240.1
exon
part_ofPaHa08g16240.1-exon-8-1787993825:48986425..48986645mRNAPaHa08g16240.1
exon
part_ofPaHa08g16240.1-exon-8-1787993825:48987657..48987741mRNAPaHa08g16240.1
exon
part_ofPaHa08g16240.1-exon-8-1787993825:48993481..48993564mRNAPaHa08g16240.1
exon
part_ofPaHa08g16240.1-exon-8-1787993825:48997931..48998278mRNAPaHa08g16240.1
exon
part_ofPaHa08g16240.1-exon-8-1787993825:48998540..48998554mRNAPaHa08g16240.1
