Feature identity
- Identifier
- PaHa08g15890.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,139 bp
- Genomic location
- 8:48,221,746–48,237,884
- Strand
- +
Hass · mRNA
PaHa08g15890.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,139
- bp
- 8:48,221,746–48,237,884
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa08g15890
- eggNOG
- Preferred name: LOC104599494 | Seed ortholog: 337451.A0A443P6W1 | COG: S | eggNOG OG: Auxin_resp@131567|A-1*, Auxin_resp@2759|B-2, Auxin_resp@3398|Cm-12, B3@131221|yd-19, B3@131567|A-1*, B3@3193|AHu-20, B3@33090|Id-12, B3@3398|BCh-24
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009733 response to auxin; GO:0009850 auxin metabolic process; GO:0010050 vegetative phase change; GO:0010158 abaxial cell fate specification; GO:0010582 floral meristem determinacy; GO:0031490 chromatin DNA binding; GO:0036094 small molecule binding; GO:0140677 molecular function activator activity; GO:1902584 positive regulation of response to water deprivation
- KEGG
- KO: K14486 | Pathway: 04075 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa08g15890.1-protein
derives_frommRNAPaHa08g15890.1
mRNAPaHa08g15890.1
part_ofgenePaHa08g15890
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48221746..48221994mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48223260..48223316mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48223543..48223725mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48223947..48224031mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48224659..48224749mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48225042..48225206mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48231144..48231263mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48231393..48231468mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48236699..48236840mRNAPaHa08g15890.1
CDS
part_ofPaHa08g15890.1-CDS-8-1787993825:48236914..48237884mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48221746..48221994mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48223260..48223316mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48223543..48223725mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48223947..48224031mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48224659..48224749mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48225042..48225206mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48231144..48231263mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48231393..48231468mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48236699..48236840mRNAPaHa08g15890.1
exon
part_ofPaHa08g15890.1-exon-8-1787993825:48236914..48237884mRNAPaHa08g15890.1
