Hass · mRNA

PaHa08g13330.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,488
bp
8:41,528,219–41,559,527
genomic location
Record overview

Feature identity

Identifier
PaHa08g13330.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,488 bp
Genomic location
8:41,528,219–41,559,527
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: cnot9 | Seed ortholog: 337451.A0A3S3NTM1 | COG: S | eggNOG OG: Rcd1@2759|A-1, Rcd1@35493|Ft-15
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening; GO:0000932 P-body; GO:0002679 respiratory burst involved in defense response; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006352 DNA-templated transcription initiation; GO:0006354 DNA-templated transcription elongation; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006402 mRNA catabolic process; GO:0006952 defense response; GO:0007283 spermatogenesis; GO:0007548 sex differentiation; GO:0008150 biological_process; GO:0009414 response to water deprivation; GO:0016567 protein ubiquitination; GO:0017148 negative regulation of translation; GO:0019221 cytokine-mediated signaling pathway; GO:0030014 CCR4-NOT complex; GO:0030015 CCR4-NOT core complex; GO:0030154 cell differentiation; GO:0031137 regulation of conjugation with cellular fusion; GO:0031142 induction of conjugation upon nitrogen starvation; GO:0031581 hemidesmosome assembly; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0032991 protein-containing complex; GO:0033138 positive regulation of peptidyl-serine phosphorylation; GO:0033147 negative regulation of intracellular estrogen receptor signaling pathway; GO:0033620 Mei2 nuclear dot complex; GO:0045742 positive regulation of epidermal growth factor receptor signaling pathway; GO:0051865 protein autoubiquitination
KEGG
KO: K12606 | Pathway: 03018 | BRITE: 00001, 03019
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa08g13330.1-CDS-8-1787993825:41528219..41528316
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41528475..41528658
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41528793..41528875
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41528966..41529056
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41529623..41529715
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41533530..41533563
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41536054..41536082
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41536141..41536185
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41545390..41545459
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41545587..41545777
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41546099..41546194
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41550775..41550881
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41554302..41554344
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41556863..41556952
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41558101..41558172
part_of
CDSPaHa08g13330.1-CDS-8-1787993825:41559366..41559527
part_of
exonPaHa08g13330.1-exon-8-1787993825:41528219..41528316
part_of
exonPaHa08g13330.1-exon-8-1787993825:41528475..41528658
part_of
exonPaHa08g13330.1-exon-8-1787993825:41528793..41528875
part_of
exonPaHa08g13330.1-exon-8-1787993825:41528966..41529056
part_of
exonPaHa08g13330.1-exon-8-1787993825:41529623..41529715
part_of
exonPaHa08g13330.1-exon-8-1787993825:41533530..41533563
part_of
exonPaHa08g13330.1-exon-8-1787993825:41536054..41536082
part_of
exonPaHa08g13330.1-exon-8-1787993825:41536141..41536185
part_of
exonPaHa08g13330.1-exon-8-1787993825:41545390..41545459
part_of
exonPaHa08g13330.1-exon-8-1787993825:41545587..41545777
part_of
exonPaHa08g13330.1-exon-8-1787993825:41546099..41546194
part_of
exonPaHa08g13330.1-exon-8-1787993825:41550775..41550881
part_of
exonPaHa08g13330.1-exon-8-1787993825:41554302..41554344
part_of
exonPaHa08g13330.1-exon-8-1787993825:41556863..41556952
part_of
exonPaHa08g13330.1-exon-8-1787993825:41558101..41558172
part_of
exonPaHa08g13330.1-exon-8-1787993825:41559366..41559527
part_of