Feature identity
- Identifier
- PaHa08g13220.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 951 bp
- Genomic location
- 8:41,104,290–41,110,066
- Strand
- −
Hass · mRNA
PaHa08g13220.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 951
- bp
- 8:41,104,290–41,110,066
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa08g13220
- eggNOG
- Preferred name: LOC110788135 | Seed ortholog: 337451.A0A443P6A0 | COG: S | eggNOG OG: AUX_IAA@131567|A-1*, AUX_IAA@2759|BU-8, AUX_IAA@33090|Fw-11, AUX_IAA@3398|de-17
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009733 response to auxin; GO:0009880 embryonic pattern specification; GO:0010051 xylem and phloem pattern formation; GO:0042802 identical protein binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0048364 root development
- KEGG
- KO: K14484 | Pathway: 04075 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa08g13220.1-protein
derives_frommRNAPaHa08g13220.1
mRNAPaHa08g13220.1
part_ofgenePaHa08g13220
CDS
part_ofPaHa08g13220.1-CDS-8-1787993825:41104290..41104339mRNAPaHa08g13220.1
CDS
part_ofPaHa08g13220.1-CDS-8-1787993825:41104458..41104519mRNAPaHa08g13220.1
CDS
part_ofPaHa08g13220.1-CDS-8-1787993825:41106888..41107026mRNAPaHa08g13220.1
CDS
part_ofPaHa08g13220.1-CDS-8-1787993825:41107827..41108152mRNAPaHa08g13220.1
CDS
part_ofPaHa08g13220.1-CDS-8-1787993825:41109693..41110066mRNAPaHa08g13220.1
exon
part_ofPaHa08g13220.1-exon-8-1787993825:41104290..41104339mRNAPaHa08g13220.1
exon
part_ofPaHa08g13220.1-exon-8-1787993825:41104458..41104519mRNAPaHa08g13220.1
exon
part_ofPaHa08g13220.1-exon-8-1787993825:41106888..41107026mRNAPaHa08g13220.1
exon
part_ofPaHa08g13220.1-exon-8-1787993825:41107827..41108152mRNAPaHa08g13220.1
exon
part_ofPaHa08g13220.1-exon-8-1787993825:41109693..41110066mRNAPaHa08g13220.1
