Feature identity
- Identifier
- PaHa08g13070.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 978 bp
- Genomic location
- 8:40,578,530–40,593,652
- Strand
- −
Hass · mRNA
PaHa08g13070.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 978
- bp
- 8:40,578,530–40,593,652
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa08g13070
- eggNOG
- Preferred name: HMGB10 | Seed ortholog: 337451.A0A3S3R419 | COG: S | eggNOG OG: ARID@131567|A-1*, ARID@2759|N-4, ARID@33090|Cw-10, HMG_box@131567|Aj-7, HMG_box@2759|Gn-11, HMG_box@3398|AXE-21
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008150 biological_process
- KEGG
- EC: ec:2.1.1.354 | KO: K22483, K22748 | Pathway: 00310, 01100 | BRITE: 00001, 01000, 03000, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa08g13070.1-protein
derives_frommRNAPaHa08g13070.1
mRNAPaHa08g13070.1
part_ofgenePaHa08g13070
CDS
part_ofPaHa08g13070.1-CDS-8-1787993825:40578530..40578619mRNAPaHa08g13070.1
CDS
part_ofPaHa08g13070.1-CDS-8-1787993825:40579883..40580241mRNAPaHa08g13070.1
CDS
part_ofPaHa08g13070.1-CDS-8-1787993825:40580657..40580743mRNAPaHa08g13070.1
CDS
part_ofPaHa08g13070.1-CDS-8-1787993825:40580859..40581021mRNAPaHa08g13070.1
CDS
part_ofPaHa08g13070.1-CDS-8-1787993825:40582284..40582362mRNAPaHa08g13070.1
CDS
part_ofPaHa08g13070.1-CDS-8-1787993825:40593453..40593652mRNAPaHa08g13070.1
exon
part_ofPaHa08g13070.1-exon-8-1787993825:40578530..40578619mRNAPaHa08g13070.1
exon
part_ofPaHa08g13070.1-exon-8-1787993825:40579883..40580241mRNAPaHa08g13070.1
exon
part_ofPaHa08g13070.1-exon-8-1787993825:40580657..40580743mRNAPaHa08g13070.1
exon
part_ofPaHa08g13070.1-exon-8-1787993825:40580859..40581021mRNAPaHa08g13070.1
exon
part_ofPaHa08g13070.1-exon-8-1787993825:40582284..40582362mRNAPaHa08g13070.1
exon
part_ofPaHa08g13070.1-exon-8-1787993825:40593453..40593652mRNAPaHa08g13070.1
