Feature identity
- Identifier
- Pa01g0396.2
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 2,190 bp
- Genomic location
- Pa01:5,047,696–5,057,948
- Strand
- +
West Indian T2T · mRNA
Pa01g0396.2
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,190
- bp
- Pa01:5,047,696–5,057,948
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa01g0396
- eggNOG
- Preferred name: ARF1 | Seed ortholog: 337451.A0A3S3NFK5 | COG: S | eggNOG OG: AUX_IAA@131567|A-1*, AUX_IAA@2759|AW-7, AUX_IAA@3193|qd-19, AUX_IAA@3398|Amh-25, Auxin_resp@131567|A-1*, Auxin_resp@2759|N-4, Auxin_resp@3398|BT-10, B3@131221|yd-19, B3@131567|A-1*, B3@3193|AHu-20, B3@33090|Id-12, B3@3398|BlQ-27
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0008219 cell death; GO:0009733 response to auxin; GO:0010150 leaf senescence; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription
- KEGG
- KO: K14486 | Pathway: 04075 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa01g0396.2-protein
derives_frommRNAPa01g0396.2
exon
part_ofPa01g0396.1:1mRNAPa01g0396.2
exon
part_ofPa01g0396.1:10mRNAPa01g0396.2
exon
part_ofPa01g0396.1:11mRNAPa01g0396.2
exon
part_ofPa01g0396.1:12mRNAPa01g0396.2
exon
part_ofPa01g0396.1:13mRNAPa01g0396.2
exon
part_ofPa01g0396.1:2mRNAPa01g0396.2
exon
part_ofPa01g0396.1:3mRNAPa01g0396.2
exon
part_ofPa01g0396.1:4mRNAPa01g0396.2
exon
part_ofPa01g0396.1:5mRNAPa01g0396.2
exon
part_ofPa01g0396.1:6mRNAPa01g0396.2
exon
part_ofPa01g0396.1:7mRNAPa01g0396.2
exon
part_ofPa01g0396.1:8mRNAPa01g0396.2
exon
part_ofPa01g0396.1:9mRNAPa01g0396.2
mRNAPa01g0396.2
part_ofgenePa01g0396
exon
part_ofPa01g0396.2:15mRNAPa01g0396.2
exon
part_ofPa01g0396.2:16mRNAPa01g0396.2
exon
part_ofPa01g0396.2:17mRNAPa01g0396.2
CDS
part_ofPa01g0396.2:cdsmRNAPa01g0396.2
