Pa01g1247.1

West Indian T2T · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,263: bp
Pa01:17,086,576–17,160,078: genomic location

Record overview

Feature identity

Identifier: Pa01g1247.1
Feature type: mRNA
Genome collection: West Indian T2T
Organism: Persea americana-West Indian
Sequence length: 4,263 bp
Genomic location: Pa01:17,086,576–17,160,078
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: Pa01g1247

eggNOG: Preferred name: PKL | Seed ortholog: 337451.A0A3S5WGG7 | COG: S | eggNOG OG: CHDII_SANT-like@2759|A-1, Chromo@131567|Kq-11, Chromo@2759|BJe-24, DUF1087@131567|A-1*, DUF1087@2759|C-2, Helicase_C|855I79@131567, Helicase_C|855I79@2759, PHD@131567|A-1*, PHD@2759|Dei-24, SNF2-rel_dom@131567|Cd-9, SNF2-rel_dom@2759|ANz-20
Gene Ontology: GO:0000976 transcription cis-regulatory region binding; GO:0001221 transcription coregulator binding; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003678 DNA helicase activity; GO:0003682 chromatin binding; GO:0003714 transcription corepressor activity; GO:0003723 RNA binding; GO:0004386 helicase activity; GO:0004402 histone acetyltransferase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006338 chromatin remodeling; GO:0008270 zinc ion binding; GO:0009414 response to water deprivation; GO:0009733 response to auxin; GO:0009736 cytokinin-activated signaling pathway; GO:0009739 response to gibberellin; GO:0009788 negative regulation of abscisic acid-activated signaling pathway; GO:0009992 intracellular water homeostasis; GO:0010385 double-stranded methylated DNA binding; GO:0016887 ATP hydrolysis activity; GO:0031491 nucleosome binding; GO:0031492 nucleosomal DNA binding; GO:0042393 histone binding; GO:0042826 histone deacetylase binding; GO:0043993 histone H3K18 acetyltransferase activity; GO:0045892 negative regulation of DNA-templated transcription; GO:0048364 root development; GO:0051301 cell division; GO:0060090 molecular adaptor activity; GO:0061628 histone H3K27me3 reader activity; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0140297 DNA-binding transcription factor binding; GO:0140658 ATP-dependent chromatin remodeler activity; GO:0140750 nucleosome array spacer activity; GO:2000023 regulation of lateral root development
KEGG: EC: ec:2.1.1.354, ec:3.1.3.16, ec:5.6.2.6 | KO: K11643 | Pathway: 03082 | BRITE: 00001, 03036

Biological context