PaHa08g05540.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,934: bp
8:9,311,932–9,359,447: genomic location

Record overview

Feature identity

Identifier: PaHa08g05540.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 2,934 bp
Genomic location: 8:9,311,932–9,359,447
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa08g05540

eggNOG: Preferred name: UBP10 | Seed ortholog: 337451.A0A3S3MQ34 | COG: S | eggNOG OG: DUSP@131567|A-1*, DUSP@2759|HO-18, DUSP@3398|UW-29, UCH@131567|Hh-17, UCH@2759|AiQ-26, UCH@3398|Hhs-38
Gene Ontology: GO:0000244 spliceosomal tri-snRNP complex assembly; GO:0001222 transcription corepressor binding; GO:0002181 cytoplasmic translation; GO:0003674 molecular_function; GO:0004197 cysteine-type endopeptidase activity; GO:0004843 cysteine-type deubiquitinase activity; GO:0005160 transforming growth factor beta receptor binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0006974 DNA damage response; GO:0007179 transforming growth factor beta receptor signaling pathway; GO:0008150 biological_process; GO:0009267 cellular response to starvation; GO:0010637 negative regulation of mitochondrial fusion; GO:0016579 protein deubiquitination; GO:0030509 BMP signaling pathway; GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway; GO:0031397 negative regulation of protein ubiquitination; GO:0031647 regulation of protein stability; GO:0031669 cellular response to nutrient levels; GO:0031685 adenosine receptor binding; GO:0034122 negative regulation of toll-like receptor signaling pathway; GO:0034394 protein localization to cell surface; GO:0035520 monoubiquitinated protein deubiquitination; GO:0038202 TORC1 signaling; GO:0042802 identical protein binding; GO:0043123 positive regulation of canonical NF-kappaB signal transduction; GO:0045947 negative regulation of translational initiation; GO:0045948 positive regulation of translational initiation; GO:0046332 SMAD binding; GO:0051252 regulation of RNA metabolic process; GO:0061649 ubiquitin-modified histone reader activity; GO:0101005 deubiquitinase activity; GO:0140492 metal-dependent deubiquitinase activity; GO:0140673 transcription elongation-coupled chromatin remodeling; GO:1900246 positive regulation of RIG-I signaling pathway; GO:1902238 regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator; GO:1904262 negative regulation of TORC1 signaling; GO:1904263 positive regulation of TORC1 signaling; GO:1905035 negative regulation of antifungal innate immune response; GO:1990167 protein K27-linked deubiquitination; GO:1990380 K48-linked deubiquitinase activity
KEGG: EC: ec:3.4.19.12 | KO: K11366, K11834, K11835, K11837, K11838, K11839, K11844, K11848, K11855, K11858, K21343 | Pathway: 03083, 04137, 04144 | BRITE: 00001, 01000, 01002, 03021, 03036, 04121, 04131

Biological context