Hass · mRNA

PaHa08g04150.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,041
bp
8:7,067,460–7,079,253
genomic location
Record overview

Feature identity

Identifier
PaHa08g04150.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
4,041 bp
Genomic location
8:7,067,460–7,079,253
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC110789516 | Seed ortholog: 337451.A0A443PPA8 | COG: S | eggNOG OG: NB-ARC@131567|AC-6, NB-ARC@3398|MMM-43, TIR@131567|fs-17, TIR@1437183|EDM-37, TIR@2759|CAj-29, TIR@3193|CNu-30
Gene Ontology
GO:0000166 nucleotide binding; GO:0002220 innate immune response activating cell surface receptor signaling pathway; GO:0002229 defense response to oomycetes; GO:0002230 positive regulation of defense response to virus by host; GO:0002238 response to molecule of fungal origin; GO:0002239 response to oomycetes; GO:0002758 innate immune response-activating signaling pathway; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003729 mRNA binding; GO:0004016 adenylate cyclase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006952 defense response; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009416 response to light stimulus; GO:0009611 response to wounding; GO:0009615 response to virus; GO:0009617 response to bacterium; GO:0009626 plant-type hypersensitive response; GO:0009637 response to blue light; GO:0009646 response to absence of light; GO:0009733 response to auxin; GO:0009751 response to salicylic acid; GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0010082 regulation of root meristem growth; GO:0010114 response to red light; GO:0010193 response to ozone; GO:0012501 programmed cell death; GO:0016045 detection of bacterium; GO:0016301 kinase activity; GO:0030275 LRR domain binding; GO:0034052 positive regulation of plant-type hypersensitive response; GO:0034644 cellular response to UV; GO:0038023 signaling receptor activity; GO:0042742 defense response to bacterium; GO:0042802 identical protein binding; GO:0043068 positive regulation of programmed cell death; GO:0045088 regulation of innate immune response; GO:0046713 borate transport; GO:0050776 regulation of immune response; GO:0050829 defense response to Gram-negative bacterium; GO:0050832 defense response to fungus; GO:0051607 defense response to virus; GO:0051707 response to other organism; GO:0062207 regulation of pattern recognition receptor signaling pathway; GO:0071446 cellular response to salicylic acid stimulus; GO:0071456 cellular response to hypoxia; GO:0098542 defense response to other organism; GO:0140376 innate immune receptor activity; GO:2000071 regulation of defense response by callose deposition; GO:2000377 regulation of reactive oxygen species metabolic process
KEGG
EC: ec:2.7.1.107, ec:3.1.3.16 | KO: K00901, K03094, K06685, K13453, K13457, K13459, K13460, K13475, K14497, K15559, K15979, K16225, K16226, K19613, K20599 | Pathway: 00561, 00564, 01100, 01110, 03083, 04016, 04070, 04075, 04120, 04141, 04626 | BRITE: 00001, 01000, 03021, 03036, 04121, 04131
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa08g04150.1-CDS-8-1787993825:7067460..7068134
part_of
CDSPaHa08g04150.1-CDS-8-1787993825:7068290..7068375
part_of
CDSPaHa08g04150.1-CDS-8-1787993825:7068532..7069891
part_of
CDSPaHa08g04150.1-CDS-8-1787993825:7070669..7071001
part_of
CDSPaHa08g04150.1-CDS-8-1787993825:7073714..7074824
part_of
CDSPaHa08g04150.1-CDS-8-1787993825:7078778..7079253
part_of
exonPaHa08g04150.1-exon-8-1787993825:7067460..7068134
part_of
exonPaHa08g04150.1-exon-8-1787993825:7068290..7068375
part_of
exonPaHa08g04150.1-exon-8-1787993825:7068532..7069891
part_of
exonPaHa08g04150.1-exon-8-1787993825:7070669..7071001
part_of
exonPaHa08g04150.1-exon-8-1787993825:7073714..7074824
part_of
exonPaHa08g04150.1-exon-8-1787993825:7078778..7079253
part_of