West Indian T2T · mRNA

Pa01g0776.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

699
bp
Pa01:10,307,694–10,313,579
genomic location
Record overview

Feature identity

Identifier
Pa01g0776.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
699 bp
Genomic location
Pa01:10,307,694–10,313,579
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC109709600 | Seed ortholog: 337451.A0A443NKK4 | COG: S | eggNOG OG: SapB_1@131567|A-1*, SapB_1@2759|C-2, SapB_2@131567|B-2, SapB_2@3398|a-6
Gene Ontology
GO:0000325 plant-type vacuole; GO:0001664 G protein-coupled receptor binding; GO:0001666 response to hypoxia; GO:0001865 NK T cell differentiation; GO:0002020 protease binding; GO:0003335 corneocyte development; GO:0003674 molecular_function; GO:0004175 endopeptidase activity; GO:0004767 sphingomyelin phosphodiesterase activity; GO:0005515 protein binding; GO:0005543 phospholipid binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005764 lysosome; GO:0005765 lysosomal membrane; GO:0005770 late endosome; GO:0005771 multivesicular body; GO:0005773 vacuole; GO:0005776 autophagosome; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006629 lipid metabolic process; GO:0006664 glycolipid metabolic process; GO:0006665 sphingolipid metabolic process; GO:0006672 ceramide metabolic process; GO:0006678 glucosylceramide metabolic process; GO:0006683 galactosylceramide catabolic process; GO:0006685 sphingomyelin catabolic process; GO:0006886 intracellular protein transport; GO:0007041 lysosomal transport; GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; GO:0007585 respiratory gaseous exchange by respiratory system; GO:0007605 sensory perception of sound; GO:0007623 circadian rhythm; GO:0008150 biological_process; GO:0009306 protein secretion; GO:0009506 plasmodesma; GO:0009749 response to glucose; GO:0009887 animal organ morphogenesis; GO:0010467 gene expression; GO:0010506 regulation of autophagy; GO:0016235 aggresome; GO:0019216 regulation of lipid metabolic process; GO:0019882 antigen processing and presentation; GO:0021702 cerebellar Purkinje cell differentiation; GO:0030149 sphingolipid catabolic process; GO:0030290 sphingolipid activator protein activity; GO:0030882 lipid antigen binding; GO:0031012 extracellular matrix; GO:0031640 killing of cells of another organism; GO:0032496 response to lipopolysaccharide; GO:0032991 protein-containing complex; GO:0033189 response to vitamin A; GO:0034614 cellular response to reactive oxygen species; GO:0035577 azurophil granule membrane; GO:0036021 endolysosome lumen; GO:0042552 myelination; GO:0042599 lamellar body; GO:0042742 defense response to bacterium; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0043129 surfactant homeostasis; GO:0043202 lysosomal lumen; GO:0043408 regulation of MAPK cascade; GO:0043410 positive regulation of MAPK cascade; GO:0044321 response to leptin; GO:0045169 fusome; GO:0045334 clathrin-coated endocytic vesicle; GO:0046513 ceramide biosynthetic process; GO:0046686 response to cadmium ion; GO:0046836 glycolipid transport; GO:0046931 pore complex assembly; GO:0048589 developmental growth; GO:0050829 defense response to Gram-negative bacterium; GO:0050877 nervous system process; GO:0050885 neuromuscular process controlling balance; GO:0051345 positive regulation of hydrolase activity; GO:0051384 response to glucocorticoid; GO:0051591 response to cAMP; GO:0055088 lipid homeostasis; GO:0055093 response to hyperoxia; GO:0060073 micturition; GO:0060736 prostate gland growth; GO:0060742 epithelial cell differentiation involved in prostate gland development; GO:0070062 extracellular exosome; GO:0070741 response to interleukin-6; GO:0070841 inclusion body assembly; GO:0070848 response to growth factor; GO:0070849 response to epidermal growth factor; GO:0071260 cellular response to mechanical stimulus; GO:0071484 cellular response to light intensity; GO:0071548 response to dexamethasone; GO:0071732 cellular response to nitric oxide; GO:0090102 cochlea development; GO:0090659 walking behavior; GO:0097110 scaffold protein binding; GO:0097208 alveolar lamellar body; GO:0097486 multivesicular body lumen; GO:0099503 secretory vesicle; GO:0140911 pore-forming activity; GO:0160317 endolysosomal intralumenal vesicle membrane; GO:1903575 cornified envelope assembly; GO:1904016 response to Thyroglobulin triiodothyronine; GO:1905146 lysosomal protein catabolic process; GO:1905572 ganglioside GM1 transport to membrane; GO:1905573 ganglioside GM1 binding; GO:1905574 ganglioside GM2 binding; GO:1905575 ganglioside GM3 binding; GO:1905576 ganglioside GT1b binding; GO:1905577 ganglioside GP1c binding; GO:7770043 lipid chaperone activity
KEGG
EC: ec:3.1.4.12, ec:3.4.23.40 | KO: K12382 | Pathway: 00600 | BRITE: 00001, 04147
Biological context

Connected feature records

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