Pa01g0816.2

Record overview

Feature identity

Identifier: Pa01g0816.2
Feature type: mRNA
Genome collection: West Indian T2T
Organism: Persea americana-West Indian
Sequence length: 498 bp
Genomic location: Pa01:10,913,594–10,914,853
Strand: −

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: Pa01g0816

eggNOG: Preferred name: LOC123098847, RRP44A | Seed ortholog: 4432.A0A1U8B3B2, 4533.J3LJK1 | COG: COG0557 | eggNOG OG: OB_Dis3@131567|C-2, OB_Dis3@2759|Bo-9, PIN_4@131567|CT-9, RNB@131567|B-2, RNB@2759|gW-22, Rrp44_CSD1@131567|A-1*, Rrp44_CSD1@2759|e-6, Rrp44_S1@131567|A-1*, Rrp44_S1@2759|C-2
Gene Ontology: GO:0000049 tRNA binding; GO:0000175 3'-5'-RNA exonuclease activity; GO:0000278 mitotic cell cycle; GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:0000465 exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723 RNA binding; GO:0004519 endonuclease activity; GO:0004521 RNA endonuclease activity; GO:0004532 RNA exonuclease activity; GO:0004540 RNA nuclease activity; GO:0005085 guanyl-nucleotide exchange factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006364 rRNA processing; GO:0006396 RNA processing; GO:0006397 mRNA processing; GO:0006401 RNA catabolic process; GO:0008150 biological_process; GO:0010468 regulation of gene expression; GO:0016075 rRNA catabolic process; GO:0030847 termination of RNA polymerase II transcription, exosome-dependent; GO:0031267 small GTPase binding; GO:0033621 nuclear mRNA surveillance of meiosis-specific transcripts; GO:0034472 snRNA 3'-end processing; GO:0043628 regulatory ncRNA 3'-end processing; GO:0051607 defense response to virus; GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay; GO:0070651 nonfunctional rRNA decay; GO:0071027 nuclear RNA surveillance; GO:0071028 nuclear mRNA surveillance; GO:0071031 nuclear mRNA surveillance of mRNA 3'-end processing; GO:0071034 CUT catabolic process; GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process; GO:0071038 TRAMP-dependent tRNA surveillance pathway; GO:0071039 nuclear polyadenylation-dependent CUT catabolic process; GO:0071042 nuclear polyadenylation-dependent mRNA catabolic process
KEGG: KO: K12585 | Pathway: 03018 | BRITE: 00001, 03019

Feature identity

Functional evidence

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