Feature identity
- Identifier
- PaHa08g00230.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,413 bp
- Genomic location
- 8:505,784–510,605
- Strand
- +
Hass · mRNA
PaHa08g00230.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,413
- bp
- 8:505,784–510,605
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa08g00230
- eggNOG
- Preferred name: LOC103720730 | Seed ortholog: 337451.A0A3S3MP90 | COG: COG0568 | eggNOG OG: Sigma70_r2@131567|AQM-18!, Sigma70_r2@33090|NGm-29, Sigma70_r2@58023|PZm-30, Sigma70_r3@131567|C-2!, Sigma70_r4@131567|Bnn-30
- Gene Ontology
- GO:0005515 protein binding; GO:0006352 DNA-templated transcription initiation; GO:0006355 regulation of DNA-templated transcription; GO:0009507 chloroplast; GO:0016987 sigma factor activity; GO:0071461 cellular response to redox state; GO:0071482 cellular response to light stimulus; GO:0080005 photosystem stoichiometry adjustment; GO:2001141 regulation of RNA biosynthetic process
- KEGG
- KO: K03086 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa08g00230.1-protein
derives_frommRNAPaHa08g00230.1
mRNAPaHa08g00230.1
part_ofgenePaHa08g00230
CDS
part_ofPaHa08g00230.1-CDS-8-1787993825:505784..506463mRNAPaHa08g00230.1
CDS
part_ofPaHa08g00230.1-CDS-8-1787993825:506811..507009mRNAPaHa08g00230.1
CDS
part_ofPaHa08g00230.1-CDS-8-1787993825:507142..507234mRNAPaHa08g00230.1
CDS
part_ofPaHa08g00230.1-CDS-8-1787993825:508290..508418mRNAPaHa08g00230.1
CDS
part_ofPaHa08g00230.1-CDS-8-1787993825:508851..508904mRNAPaHa08g00230.1
CDS
part_ofPaHa08g00230.1-CDS-8-1787993825:509001..509078mRNAPaHa08g00230.1
CDS
part_ofPaHa08g00230.1-CDS-8-1787993825:509180..509242mRNAPaHa08g00230.1
CDS
part_ofPaHa08g00230.1-CDS-8-1787993825:510489..510605mRNAPaHa08g00230.1
exon
part_ofPaHa08g00230.1-exon-8-1787993825:505784..506463mRNAPaHa08g00230.1
exon
part_ofPaHa08g00230.1-exon-8-1787993825:506811..507009mRNAPaHa08g00230.1
exon
part_ofPaHa08g00230.1-exon-8-1787993825:507142..507234mRNAPaHa08g00230.1
exon
part_ofPaHa08g00230.1-exon-8-1787993825:508290..508418mRNAPaHa08g00230.1
exon
part_ofPaHa08g00230.1-exon-8-1787993825:508851..508904mRNAPaHa08g00230.1
exon
part_ofPaHa08g00230.1-exon-8-1787993825:509001..509078mRNAPaHa08g00230.1
exon
part_ofPaHa08g00230.1-exon-8-1787993825:509180..509242mRNAPaHa08g00230.1
exon
part_ofPaHa08g00230.1-exon-8-1787993825:510489..510605mRNAPaHa08g00230.1
