PaHa07g28060.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,744: bp
7:76,065,264–76,080,648: genomic location

Record overview

Feature identity

Identifier: PaHa07g28060.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 3,744 bp
Genomic location: 7:76,065,264–76,080,648
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa07g28060

eggNOG: Preferred name: JMJ14 | Seed ortholog: 337451.A0A3S3N057 | COG: S | eggNOG OG: FYRC@131567|A-1*, FYRC@2759|AN-7, FYRC@3398|FL-14, FYRN@131567|A-1*, FYRN@2759|Ar-8, FYRN@3398|IX-16, JmjC@131567|Ae-7, JmjC@2759|Xh-17, JmjC@58023|Aee-25, JmjN@131567|A-1*, JmjN@2759|U-5!, JmjN@3398|FR-14, zf-C5HC2@131567|A-1*, zf-C5HC2@33090|B-2!, zf-C5HC2@3398|d-6
Gene Ontology: GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0009555 pollen development; GO:0009627 systemic acquired resistance; GO:0009793 embryo development ending in seed dormancy; GO:0009909 regulation of flower development; GO:0009910 negative regulation of flower development; GO:0010082 regulation of root meristem growth; GO:0032453 histone H3K4 demethylase activity; GO:0034647 histone H3K4me/H3K4me2/H3K4me3 demethylase activity; GO:0042054 histone methyltransferase activity; GO:0044027 negative regulation of gene expression via chromosomal CpG island methylation; GO:0045814 negative regulation of gene expression, epigenetic; GO:0045892 negative regulation of DNA-templated transcription; GO:0048573 photoperiodism, flowering; GO:0048579 negative regulation of long-day photoperiodism, flowering; GO:0048589 developmental growth; GO:0060147 regulation of post-transcriptional gene silencing; GO:0062034 L-pipecolic acid biosynthetic process; GO:0099402 plant organ development; GO:1900426 positive regulation of defense response to bacterium; GO:1901002 positive regulation of response to salt stress; GO:1901672 positive regulation of systemic acquired resistance; GO:1902074 response to salt; GO:2000280 regulation of root development
KEGG: EC: ec:1.14.11.67 | KO: K11446 | Pathway: 03083, 04550 | BRITE: 00001, 01000, 01009, 03036

Biological context