Feature identity
- Identifier
- PaHa07g27550.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,190 bp
- Genomic location
- 7:75,404,942–75,422,291
- Strand
- +
Hass · mRNA
PaHa07g27550.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,190
- bp
- 7:75,404,942–75,422,291
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa07g27550
- eggNOG
- Preferred name: FAH1 | Seed ortholog: 337451.A0A443P4R6 | COG: COG3000 | eggNOG OG: FA_hydroxylase@131567|N-4, FA_hydroxylase@3193|BBA-23, FA_hydroxylase@3398|CqG-27
- Gene Ontology
- GO:0000038 very long-chain fatty acid metabolic process; GO:0001949 sebaceous gland cell differentiation; GO:0005515 protein binding; GO:0005739 mitochondrion; GO:0005783 endoplasmic reticulum; GO:0006631 fatty acid metabolic process; GO:0006673 inositol phosphoceramide metabolic process; GO:0006675 mannosyl-inositol phosphorylceramide metabolic process; GO:0006679 glucosylceramide biosynthetic process; GO:0006682 galactosylceramide biosynthetic process; GO:0030148 sphingolipid biosynthetic process; GO:0030258 lipid modification; GO:0032286 central nervous system myelin maintenance; GO:0032287 peripheral nervous system myelin maintenance; GO:0042127 regulation of cell population proliferation; GO:0042634 regulation of hair cycle; GO:0044857 plasma membrane raft organization; GO:0046513 ceramide biosynthetic process; GO:0051999 mannosyl-inositol phosphorylceramide biosynthetic process; GO:0061436 establishment of skin barrier; GO:0102771 dihydroceramide fatty acyl 2-hydroxylase activity
- KEGG
- EC: ec:1.14.18.7 | KO: K19706 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa07g27550.1-protein
derives_frommRNAPaHa07g27550.1
mRNAPaHa07g27550.1
part_ofgenePaHa07g27550
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75404942..75406196mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75406316..75406370mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75406476..75406598mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75418776..75418809mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75420205..75420264mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75420337..75420429mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75420523..75420719mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75420856..75420961mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75421857..75422003mRNAPaHa07g27550.1
CDS
part_ofPaHa07g27550.1-CDS-7-1787993825:75422172..75422291mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75404942..75406196mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75406316..75406370mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75406476..75406598mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75418776..75418809mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75420205..75420264mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75420337..75420429mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75420523..75420719mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75420856..75420961mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75421857..75422003mRNAPaHa07g27550.1
exon
part_ofPaHa07g27550.1-exon-7-1787993825:75422172..75422291mRNAPaHa07g27550.1
