Hass · mRNA

PaHa07g27530.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,149
bp
7:75,341,509–75,343,368
genomic location
Record overview

Feature identity

Identifier
PaHa07g27530.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,149 bp
Genomic location
7:75,341,509–75,343,368
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MYB63 | Seed ortholog: 337451.A0A443P4R0 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@3193|GOC-39, Myb_DNA-binding@33090|Eca-37, Myb_DNA-binding@3398|HJq-40
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0002237 response to molecule of bacterial origin; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009411 response to UV; GO:0009416 response to light stimulus; GO:0009646 response to absence of light; GO:0009723 response to ethylene; GO:0009809 lignin biosynthetic process; GO:0009866 induced systemic resistance, ethylene mediated signaling pathway; GO:0010043 response to zinc ion; GO:0010447 response to acidic pH; GO:0010468 regulation of gene expression; GO:0019748 secondary metabolic process; GO:0045893 positive regulation of DNA-templated transcription; GO:0051365 cellular response to potassium ion starvation; GO:0098849 cellular detoxification of cadmium ion; GO:1990359 stress response to zinc ion; GO:1990532 stress response to nickel ion; GO:1990641 response to iron ion starvation; GO:2000652 regulation of secondary cell wall biogenesis
KEGG
KO: K09422 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa07g27530.1-CDS-7-1787993825:75341509..75342388
part_of
CDSPaHa07g27530.1-CDS-7-1787993825:75342881..75343010
part_of
CDSPaHa07g27530.1-CDS-7-1787993825:75343230..75343368
part_of
exonPaHa07g27530.1-exon-7-1787993825:75341509..75342388
part_of
exonPaHa07g27530.1-exon-7-1787993825:75342881..75343010
part_of
exonPaHa07g27530.1-exon-7-1787993825:75343230..75343368
part_of