West Indian T2T · mRNA

Pa02g3009.2

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,092
bp
Pa02:76,322,137–76,329,990
genomic location
Record overview

Feature identity

Identifier
Pa02g3009.2
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,092 bp
Genomic location
Pa02:76,322,137–76,329,990
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MKRN | Seed ortholog: 337451.A0A3S3NRK3 | COG: S | eggNOG OG: zf-C3HC4@131567|B-2, zf-C3HC4@2759|DT-10, zf-C3HC4@3398|ABo-20, zf-CCCH@131567|LU-16, zf-CCCH@2759|BIj-28, zf-CCCH_2@131567|r-7, zf-CCCH_2@2759|BL-9, zf-CCCH_4@131567|A-1*, zf-CCCH_4@2759|RT-13
Gene Ontology
GO:0000209 protein polyubiquitination; GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening; GO:0000956 nuclear-transcribed mRNA catabolic process; GO:0002119 nematode larval development; GO:0002862 negative regulation of inflammatory response to antigenic stimulus; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003690 double-stranded DNA binding; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008595 anterior/posterior axis specification, embryo; GO:0010608 post-transcriptional regulation of gene expression; GO:0010842 retina layer formation; GO:0031138 negative regulation of conjugation with cellular fusion; GO:0031139 positive regulation of conjugation with cellular fusion; GO:0035925 mRNA 3'-UTR AU-rich region binding; GO:0042551 neuron maturation; GO:0042802 identical protein binding; GO:0043491 phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0044692 exoribonuclease activator activity; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046012 positive regulation of oskar mRNA translation; GO:0046628 positive regulation of insulin receptor signaling pathway; GO:0061630 ubiquitin protein ligase activity; GO:0062104 pumilio-response element binding; GO:0110044 regulation of cell cycle switching, mitotic to meiotic cell cycle; GO:0140610 RNA sequestering activity; GO:1901223 negative regulation of non-canonical NF-kappaB signal transduction; GO:1905762 CCR4-NOT complex binding; GO:1905881 positive regulation of oogenesis; GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process; GO:1990830 cellular response to leukemia inhibitory factor
KEGG
EC: ec:2.3.2.27 | KO: K15687 | Pathway: 03018, 03040 | BRITE: 00001, 01000, 04121
Biological context

Connected feature records

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