Feature identity
- Identifier
- Pa02g5039.2
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 1,116 bp
- Genomic location
- Pa02:103,418,266–103,428,427
- Strand
- +
West Indian T2T · mRNA
Pa02g5039.2
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,116
- bp
- Pa02:103,418,266–103,428,427
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa02g5039
- eggNOG
- Preferred name: LOC543178 | Seed ortholog: 337451.A0A3S3PWZ2 | COG: S | eggNOG OG: MFMR@131221|G-3, MFMR@131567|A-1*, MFMR@3398|X-5, MFMR_assoc@131567|A-1*, MFMR_assoc@3398|L-4, bZIP_1@131567|Ac-7, bZIP_1@3398|wD-22
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription
- KEGG
- KO: K09060 | Pathway: 04011 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa02g5039.2-protein
derives_frommRNAPa02g5039.2
exon
part_ofPa02g5039.1:1mRNAPa02g5039.2
exon
part_ofPa02g5039.1:10mRNAPa02g5039.2
exon
part_ofPa02g5039.1:11mRNAPa02g5039.2
exon
part_ofPa02g5039.1:12mRNAPa02g5039.2
exon
part_ofPa02g5039.1:2mRNAPa02g5039.2
exon
part_ofPa02g5039.1:3mRNAPa02g5039.2
exon
part_ofPa02g5039.1:4mRNAPa02g5039.2
exon
part_ofPa02g5039.1:5mRNAPa02g5039.2
exon
part_ofPa02g5039.1:6mRNAPa02g5039.2
exon
part_ofPa02g5039.1:7mRNAPa02g5039.2
exon
part_ofPa02g5039.1:8mRNAPa02g5039.2
mRNAPa02g5039.2
part_ofgenePa02g5039
exon
part_ofPa02g5039.2:13mRNAPa02g5039.2
CDS
part_ofPa02g5039.2:cdsmRNAPa02g5039.2
