Feature identity
- Identifier
- Pa04g0962.1
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 2,235 bp
- Genomic location
- Pa04:12,150,730–12,155,868
- Strand
- +
West Indian T2T · mRNA
Pa04g0962.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,235
- bp
- Pa04:12,150,730–12,155,868
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa04g0962
- eggNOG
- Preferred name: LOC103704473 | Seed ortholog: 337451.A0A3S3P1M9 | COG: COG4715 | eggNOG OG: DBD_Tnp_Mut@131221|Ck-9, DBD_Tnp_Mut@131567|A-1*, DBD_Tnp_Mut@2759|AZ-7, MULE@131567|AQ-7, MULE@3398|AMx-21!, PB1@131567|A-1*, PB1@2759|Al-8!, SWIM@131567|Z-5
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0001046 core promoter sequence-specific DNA binding; GO:0001216 DNA-binding transcription activator activity; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009414 response to water deprivation; GO:0010118 stomatal movement; GO:0010167 response to nitrate; GO:0042128 nitrate assimilation; GO:0090548 response to nitrate starvation; GO:0097009 energy homeostasis
- KEGG
- EC: ec:3.4.19.12 | KO: K17604 | Pathway: 03083, 04016, 04075 | Module: M00081 | BRITE: 00001, 01009
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa04g0962.1-protein
derives_frommRNAPa04g0962.1
mRNAPa04g0962.1
part_ofgenePa04g0962
exon
part_ofPa04g0962.1:1mRNAPa04g0962.1
exon
part_ofPa04g0962.1:2mRNAPa04g0962.1
CDS
part_ofPa04g0962.1:cdsmRNAPa04g0962.1
