Hass · mRNA

PaHa01g02200.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

531
bp
1:2,514,152–2,517,273
genomic location
Record overview

Feature identity

Identifier
PaHa01g02200.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
531 bp
Genomic location
1:2,514,152–2,517,273
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MNB1B | Seed ortholog: 337451.A0A3S3MRW9 | COG: S | eggNOG OG: HMG_box@131567|Aj-7, HMG_box@2759|Ii-12!, HMG_box@3193|AhF-22, HMG_box@33090|AHp-20, HMG_box@3398|Bxb-26
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0001708 cell fate specification; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006338 chromatin remodeling; GO:0007379 segment specification; GO:0008150 biological_process; GO:0008348 negative regulation of antimicrobial humoral response; GO:0008406 gonad development; GO:0009507 chloroplast; GO:0016055 Wnt signaling pathway; GO:0017055 negative regulation of RNA polymerase II transcription preinitiation complex assembly; GO:0030527 structural constituent of chromatin; GO:0032392 DNA geometric change; GO:0032502 developmental process; GO:0035218 leg disc development; GO:0040025 vulval development; GO:0045892 negative regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II
KEGG
EC: ec:2.1.1.354 | KO: K25507 | Pathway: 00310, 01100, 03410, 04140, 04217, 04613 | BRITE: 00001, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g02200.1-CDS-1-1787993825:2514152..2514202
part_of
CDSPaHa01g02200.1-CDS-1-1787993825:2515991..2516079
part_of
CDSPaHa01g02200.1-CDS-1-1787993825:2516161..2516218
part_of
CDSPaHa01g02200.1-CDS-1-1787993825:2516738..2516782
part_of
CDSPaHa01g02200.1-CDS-1-1787993825:2516899..2516979
part_of
CDSPaHa01g02200.1-CDS-1-1787993825:2517067..2517273
part_of
exonPaHa01g02200.1-exon-1-1787993825:2514152..2514202
part_of
exonPaHa01g02200.1-exon-1-1787993825:2515991..2516079
part_of
exonPaHa01g02200.1-exon-1-1787993825:2516161..2516218
part_of
exonPaHa01g02200.1-exon-1-1787993825:2516738..2516782
part_of
exonPaHa01g02200.1-exon-1-1787993825:2516899..2516979
part_of
exonPaHa01g02200.1-exon-1-1787993825:2517067..2517273
part_of