West Indian T2T · mRNA

Pa06g1764.3

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

282
bp
Pa06:32,423,658–32,424,042
genomic location
Record overview

Feature identity

Identifier
Pa06g1764.3
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
282 bp
Genomic location
Pa06:32,423,658–32,424,042
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC109011131, LOC123106092 | Seed ortholog: 337451.A0A3S3PKP5, 337451.A0A443PGB0 | COG: S | eggNOG OG: Anticodon_3@131567|A-1, Anticodon_3@3398|CEH-35, CNOT1_CAF1_bind@2759|A-1, CNOT1_HEAT@2759|A-1, CNOT1_TTP_bind@2759|A-1, DUF3819@2759|A-1, Not1@2759|A-1, tRNA-synt_1g@131567|AT-7, tRNA-synt_1g@1437183|ERB-36, tRNA_bind@131567|h-6
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening; GO:0000749 response to pheromone triggering conjugation with cellular fusion; GO:0000956 nuclear-transcribed mRNA catabolic process; GO:0001829 trophectodermal cell differentiation; GO:0002119 nematode larval development; GO:0002181 cytoplasmic translation; GO:0004825 methionine-tRNA ligase activity; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006368 transcription elongation by RNA polymerase II; GO:0006402 mRNA catabolic process; GO:0006418 tRNA aminoacylation for protein translation; GO:0006424 glutamyl-tRNA aminoacylation; GO:0006431 methionyl-tRNA aminoacylation; GO:0007124 pseudohyphal growth; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0009267 cellular response to starvation; GO:0009303 rRNA transcription; GO:0010468 regulation of gene expression; GO:0010494 cytoplasmic stress granule; GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly; GO:0010607 negative regulation of cytoplasmic mRNA processing body assembly; GO:0017148 negative regulation of translation; GO:0030447 filamentous growth; GO:0030707 follicle cell of egg chamber development; GO:0030953 astral microtubule organization; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0033147 negative regulation of intracellular estrogen receptor signaling pathway; GO:0033962 P-body assembly; GO:0035195 miRNA-mediated post-transcriptional gene silencing; GO:0036120 cellular response to platelet-derived growth factor stimulus; GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0040001 establishment of mitotic spindle localization; GO:0048387 negative regulation of retinoic acid receptor signaling pathway; GO:0048477 oogenesis; GO:0048589 developmental growth; GO:0050667 homocysteine metabolic process; GO:0051726 regulation of cell cycle; GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; GO:0061014 positive regulation of mRNA catabolic process; GO:0071364 cellular response to epidermal growth factor stimulus; GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I; GO:1990825 sequence-specific mRNA binding; GO:2000036 regulation of stem cell population maintenance
KEGG
EC: ec:6.1.1.10 | KO: K01874, K12604 | Pathway: 00450, 00970, 01100, 03018 | BRITE: 00001, 01000, 01007, 01613, 03016, 03019
Biological context

Connected feature records

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