Feature identity
- Identifier
- PaHa07g07550.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 249 bp
- Genomic location
- 7:14,108,836–14,111,158
- Strand
- +
Hass · mRNA
PaHa07g07550.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 249
- bp
- 7:14,108,836–14,111,158
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa07g07550
- eggNOG
- Preferred name: LOC107792657 | Seed ortholog: 3983.A0A2C9WNQ7 | COG: S | eggNOG OG: HMG_box@131567|Aj-7, HMG_box@2759|Ii-12!, HMG_box@3193|AhF-22, HMG_box@33090|AHp-20, HMG_box@3398|Bxc-26
- Gene Ontology
- GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0001708 cell fate specification; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006338 chromatin remodeling; GO:0007379 segment specification; GO:0008150 biological_process; GO:0008348 negative regulation of antimicrobial humoral response; GO:0008406 gonad development; GO:0016055 Wnt signaling pathway; GO:0017055 negative regulation of RNA polymerase II transcription preinitiation complex assembly; GO:0030527 structural constituent of chromatin; GO:0032392 DNA geometric change; GO:0032502 developmental process; GO:0035218 leg disc development; GO:0040025 vulval development; GO:0045892 negative regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II
- KEGG
- EC: ec:2.1.1.354 | KO: K25507 | Pathway: 00310, 01100, 03410, 04140, 04217, 04613 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa07g07550.1-protein
derives_frommRNAPaHa07g07550.1
mRNAPaHa07g07550.1
part_ofgenePaHa07g07550
CDS
part_ofPaHa07g07550.1-CDS-7-1787993825:14108836..14108847mRNAPaHa07g07550.1
CDS
part_ofPaHa07g07550.1-CDS-7-1787993825:14110189..14110269mRNAPaHa07g07550.1
CDS
part_ofPaHa07g07550.1-CDS-7-1787993825:14110405..14110502mRNAPaHa07g07550.1
CDS
part_ofPaHa07g07550.1-CDS-7-1787993825:14110967..14111008mRNAPaHa07g07550.1
CDS
part_ofPaHa07g07550.1-CDS-7-1787993825:14111143..14111158mRNAPaHa07g07550.1
exon
part_ofPaHa07g07550.1-exon-7-1787993825:14108836..14108847mRNAPaHa07g07550.1
exon
part_ofPaHa07g07550.1-exon-7-1787993825:14110189..14110269mRNAPaHa07g07550.1
exon
part_ofPaHa07g07550.1-exon-7-1787993825:14110405..14110502mRNAPaHa07g07550.1
exon
part_ofPaHa07g07550.1-exon-7-1787993825:14110967..14111008mRNAPaHa07g07550.1
exon
part_ofPaHa07g07550.1-exon-7-1787993825:14111143..14111158mRNAPaHa07g07550.1
