Feature identity
- Identifier
- PaHa07g02610.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 825 bp
- Genomic location
- 7:4,760,802–4,765,636
- Strand
- +
Hass · mRNA
PaHa07g02610.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 825
- bp
- 7:4,760,802–4,765,636
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa07g02610
- eggNOG
- Preferred name: LOC104592497 | Seed ortholog: 337451.A0A3S3N2F0 | COG: S | eggNOG OG: SNAPC1@2759|A-1
- Gene Ontology
- GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding; GO:0001046 core promoter sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003681 bent DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0006383 transcription by RNA polymerase III; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0019185 snRNA-activating protein complex; GO:0031981 nuclear lumen; GO:0042795 snRNA transcription by RNA polymerase II; GO:0042796 snRNA transcription by RNA polymerase III; GO:0043565 sequence-specific DNA binding; GO:0065004 protein-DNA complex assembly
- KEGG
- KO: K15208 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa07g02610.1-protein
derives_frommRNAPaHa07g02610.1
mRNAPaHa07g02610.1
part_ofgenePaHa07g02610
CDS
part_ofPaHa07g02610.1-CDS-7-1787993825:4760802..4760858mRNAPaHa07g02610.1
CDS
part_ofPaHa07g02610.1-CDS-7-1787993825:4760995..4761121mRNAPaHa07g02610.1
CDS
part_ofPaHa07g02610.1-CDS-7-1787993825:4762739..4762852mRNAPaHa07g02610.1
CDS
part_ofPaHa07g02610.1-CDS-7-1787993825:4763191..4763389mRNAPaHa07g02610.1
CDS
part_ofPaHa07g02610.1-CDS-7-1787993825:4763490..4763535mRNAPaHa07g02610.1
CDS
part_ofPaHa07g02610.1-CDS-7-1787993825:4765120..4765195mRNAPaHa07g02610.1
CDS
part_ofPaHa07g02610.1-CDS-7-1787993825:4765431..4765636mRNAPaHa07g02610.1
exon
part_ofPaHa07g02610.1-exon-7-1787993825:4760802..4760858mRNAPaHa07g02610.1
exon
part_ofPaHa07g02610.1-exon-7-1787993825:4760995..4761121mRNAPaHa07g02610.1
exon
part_ofPaHa07g02610.1-exon-7-1787993825:4762739..4762852mRNAPaHa07g02610.1
exon
part_ofPaHa07g02610.1-exon-7-1787993825:4763191..4763389mRNAPaHa07g02610.1
exon
part_ofPaHa07g02610.1-exon-7-1787993825:4763490..4763535mRNAPaHa07g02610.1
exon
part_ofPaHa07g02610.1-exon-7-1787993825:4765120..4765195mRNAPaHa07g02610.1
exon
part_ofPaHa07g02610.1-exon-7-1787993825:4765431..4765636mRNAPaHa07g02610.1
