Feature identity
- Identifier
- Pa09g1998.1
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 609 bp
- Genomic location
- Pa09:44,751,056–44,752,078
- Strand
- −
West Indian T2T · mRNA
Pa09g1998.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 609
- bp
- Pa09:44,751,056–44,752,078
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa09g1998
- eggNOG
- Preferred name: ATHB-40 | Seed ortholog: 337451.A0A443PY42 | COG: S | eggNOG OG: Homeodomain@131567|XU-17, Homeodomain@2759|ACU-20!, Homeodomain@3193|EZV-29, Homeodomain@3398|FTv-30, Homeodomain@35493|BwQ-25
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009733 response to auxin; GO:0048364 root development
- KEGG
- KO: K09338 | Pathway: 04113, 04148, 04927, 04934, 05202 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa09g1998.1-protein
derives_frommRNAPa09g1998.1
mRNAPa09g1998.1
part_ofgenePa09g1998
exon
part_ofPa09g1998.1:1mRNAPa09g1998.1
exon
part_ofPa09g1998.1:2mRNAPa09g1998.1
exon
part_ofPa09g1998.1:3mRNAPa09g1998.1
CDS
part_ofPa09g1998.1:cdsmRNAPa09g1998.1
