Feature identity
- Identifier
- PaHa06g20620.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 402 bp
- Genomic location
- 6:54,065,341–54,067,650
- Strand
- −
Hass · mRNA
PaHa06g20620.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 402
- bp
- 6:54,065,341–54,067,650
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g20620
- eggNOG
- Preferred name: BTAF1 | Seed ortholog: 337451.A0A3S3NX02 | COG: S | eggNOG OG: DUF3535@2759|A-1, Helicase_C|PA5U5V@131567, Helicase_C|PA5U5V@2759, SNF2-rel_dom@131567|BD-7
- Gene Ontology
- GO:0003677 DNA binding; GO:0003712 transcription coregulator activity; GO:0003723 RNA binding; GO:0004386 helicase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008094 ATP-dependent activity, acting on DNA; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0016887 ATP hydrolysis activity; GO:0017025 TBP-class protein binding; GO:0042802 identical protein binding; GO:0140658 ATP-dependent chromatin remodeler activity; GO:1902185 positive regulation of shoot apical meristem development
- KEGG
- KO: K15192 | Pathway: 03082 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g20620.1-protein
derives_frommRNAPaHa06g20620.1
mRNAPaHa06g20620.1
part_ofgenePaHa06g20620
CDS
part_ofPaHa06g20620.1-CDS-6-1787993825:54065341..54065459mRNAPaHa06g20620.1
CDS
part_ofPaHa06g20620.1-CDS-6-1787993825:54067077..54067188mRNAPaHa06g20620.1
CDS
part_ofPaHa06g20620.1-CDS-6-1787993825:54067480..54067650mRNAPaHa06g20620.1
exon
part_ofPaHa06g20620.1-exon-6-1787993825:54065341..54065459mRNAPaHa06g20620.1
exon
part_ofPaHa06g20620.1-exon-6-1787993825:54067077..54067188mRNAPaHa06g20620.1
exon
part_ofPaHa06g20620.1-exon-6-1787993825:54067480..54067650mRNAPaHa06g20620.1
