West Indian T2T · mRNA

Pa11g1592.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,461
bp
Pa11:44,051,572–44,056,150
genomic location
Record overview

Feature identity

Identifier
Pa11g1592.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,461 bp
Genomic location
Pa11:44,051,572–44,056,150
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: CYP720B1 | Seed ortholog: 337451.A0A3S3MYW9 | COG: COG2124 | eggNOG OG: p450@131567|E-3, p450@58023|wT-15
Gene Ontology
GO:0001568 blood vessel development; GO:0001666 response to hypoxia; GO:0001709 cell fate determination; GO:0001756 somitogenesis; GO:0001768 establishment of T cell polarity; GO:0001822 kidney development; GO:0001944 vasculature development; GO:0001972 retinoic acid binding; GO:0003131 mesodermal-endodermal cell signaling; GO:0003151 outflow tract morphogenesis; GO:0005515 protein binding; GO:0005739 mitochondrion; GO:0006722 triterpenoid metabolic process; GO:0006766 vitamin metabolic process; GO:0006805 xenobiotic metabolic process; GO:0006954 inflammatory response; GO:0007140 male meiotic nuclear division; GO:0007283 spermatogenesis; GO:0007417 central nervous system development; GO:0007507 heart development; GO:0008150 biological_process; GO:0008401 retinoic acid 4-hydroxylase activity; GO:0009414 response to water deprivation; GO:0009639 response to red or far red light; GO:0009685 gibberellin metabolic process; GO:0009686 gibberellin biosynthetic process; GO:0009687 abscisic acid metabolic process; GO:0009733 response to auxin; GO:0009737 response to abscisic acid; GO:0009835 fruit ripening; GO:0009846 pollen germination; GO:0009856 pollination; GO:0009860 pollen tube growth; GO:0009952 anterior/posterior pattern specification; GO:0009954 proximal/distal pattern formation; GO:0010114 response to red light; GO:0010295 (+)-abscisic acid 8'-hydroxylase activity; GO:0010628 positive regulation of gene expression; GO:0014032 neural crest cell development; GO:0016135 saponin biosynthetic process; GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen; GO:0019742 pentacyclic triterpenoid metabolic process; GO:0019825 oxygen binding; GO:0020037 heme binding; GO:0021661 rhombomere 4 morphogenesis; GO:0021797 forebrain anterior/posterior pattern specification; GO:0030278 regulation of ossification; GO:0030326 embryonic limb morphogenesis; GO:0030902 hindbrain development; GO:0030917 midbrain-hindbrain boundary development; GO:0031016 pancreas development; GO:0032526 response to retinoic acid; GO:0033189 response to vitamin A; GO:0033339 pectoral fin development; GO:0034653 retinoic acid catabolic process; GO:0034672 anterior/posterior pattern specification involved in pronephros development; GO:0035992 tendon formation; GO:0042476 odontogenesis; GO:0042573 retinoic acid metabolic process; GO:0042574 retinal metabolic process; GO:0043587 tongue morphogenesis; GO:0045580 regulation of T cell differentiation; GO:0046345 abscisic acid catabolic process; GO:0048284 organelle fusion; GO:0048384 retinoic acid receptor signaling pathway; GO:0048385 regulation of retinoic acid receptor signaling pathway; GO:0048387 negative regulation of retinoic acid receptor signaling pathway; GO:0048701 embryonic cranial skeleton morphogenesis; GO:0048838 release of seed from dormancy; GO:0048854 brain morphogenesis; GO:0050832 defense response to fungus; GO:0051777 ent-kaurenoic acid monooxygenase activity; GO:0055014 atrial cardiac muscle cell development; GO:0060323 head morphogenesis; GO:0060349 bone morphogenesis; GO:0060363 cranial suture morphogenesis; GO:0060365 coronal suture morphogenesis; GO:0060536 cartilage morphogenesis; GO:0061436 establishment of skin barrier; GO:0062182 all-trans retinoic acid 4-hydrolase activity; GO:0062183 all-trans retinoic acid 18-hydroxylase activity; GO:0070268 cornification; GO:0071299 cellular response to vitamin A; GO:0071300 cellular response to retinoic acid; GO:0071456 cellular response to hypoxia; GO:0102373 beta-amyrin 28-monooxygenase activity; GO:2001037 positive regulation of tongue muscle cell differentiation
KEGG
EC: ec:1.14.14.179 | KO: K09590 | Pathway: 00905, 01100, 01110 | Module: M00371 | BRITE: 00001, 00199, 01000
Biological context

Connected feature records

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