Hass · mRNA

PaHa06g17330.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

681
bp
6:43,373,126–43,382,903
genomic location
Record overview

Feature identity

Identifier
PaHa06g17330.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
681 bp
Genomic location
6:43,373,126–43,382,903
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104608101 | Seed ortholog: 337451.A0A443PCY0 | COG: S | eggNOG OG: Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@3193|BFC-31, Myb_DNA-binding@33090|Adt-29
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007165 signal transduction; GO:0007623 circadian rhythm; GO:0009658 chloroplast organization; GO:0009910 negative regulation of flower development; GO:0010380 regulation of chlorophyll biosynthetic process; GO:0010638 positive regulation of organelle organization; GO:0045893 positive regulation of DNA-templated transcription; GO:1900056 negative regulation of leaf senescence
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa06g17330.1-CDS-6-1787993825:43373126..43373371
part_of
CDSPaHa06g17330.1-CDS-6-1787993825:43378304..43378421
part_of
CDSPaHa06g17330.1-CDS-6-1787993825:43380344..43380459
part_of
CDSPaHa06g17330.1-CDS-6-1787993825:43382015..43382091
part_of
CDSPaHa06g17330.1-CDS-6-1787993825:43382780..43382903
part_of
exonPaHa06g17330.1-exon-6-1787993825:43373126..43373371
part_of
exonPaHa06g17330.1-exon-6-1787993825:43378304..43378421
part_of
exonPaHa06g17330.1-exon-6-1787993825:43380344..43380459
part_of
exonPaHa06g17330.1-exon-6-1787993825:43382015..43382091
part_of
exonPaHa06g17330.1-exon-6-1787993825:43382780..43382903
part_of