Feature identity
- Identifier
- PaHa06g17160.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,032 bp
- Genomic location
- 6:39,645,595–39,668,235
- Strand
- +
Hass · mRNA
PaHa06g17160.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,032
- bp
- 6:39,645,595–39,668,235
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g17160
- eggNOG
- Preferred name: LOC120112752 | Seed ortholog: 337451.A0A443PCX8 | COG: S | eggNOG OG: Histone@131567|B-2, Histone@33090|DV-12, Histone@3398|Ia-15
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0016602 CCAAT-binding factor complex; GO:0045893 positive regulation of DNA-templated transcription; GO:0048579 negative regulation of long-day photoperiodism, flowering
- KEGG
- EC: ec:2.7.7.7 | KO: K08066 | Pathway: 03030, 03410, 03420, 04612, 05152 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g17160.1-protein
derives_frommRNAPaHa06g17160.1
mRNAPaHa06g17160.1
part_ofgenePaHa06g17160
CDS
part_ofPaHa06g17160.1-CDS-6-1787993825:39645595..39645796mRNAPaHa06g17160.1
CDS
part_ofPaHa06g17160.1-CDS-6-1787993825:39646387..39646399mRNAPaHa06g17160.1
CDS
part_ofPaHa06g17160.1-CDS-6-1787993825:39667419..39668235mRNAPaHa06g17160.1
exon
part_ofPaHa06g17160.1-exon-6-1787993825:39645595..39645796mRNAPaHa06g17160.1
exon
part_ofPaHa06g17160.1-exon-6-1787993825:39646387..39646399mRNAPaHa06g17160.1
exon
part_ofPaHa06g17160.1-exon-6-1787993825:39667419..39668235mRNAPaHa06g17160.1
