Feature identity
- Identifier
- PaHa06g16000.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,203 bp
- Genomic location
- 6:30,004,081–30,006,010
- Strand
- −
Hass · mRNA
PaHa06g16000.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,203
- bp
- 6:30,004,081–30,006,010
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g16000
- eggNOG
- Preferred name: MYB4 | Seed ortholog: 337451.A0A443PD22 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@3193|GOC-39, Myb_DNA-binding@33090|Eca-37, Myb_DNA-binding@3398|HJq-40
- Gene Ontology
- GO:0002237 response to molecule of bacterial origin; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009866 induced systemic resistance, ethylene mediated signaling pathway; GO:0010043 response to zinc ion; GO:0010447 response to acidic pH; GO:0010468 regulation of gene expression; GO:0019748 secondary metabolic process; GO:0051365 cellular response to potassium ion starvation; GO:0098849 cellular detoxification of cadmium ion; GO:1990359 stress response to zinc ion; GO:1990532 stress response to nickel ion; GO:1990641 response to iron ion starvation
- KEGG
- KO: K09422 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g16000.1-protein
derives_frommRNAPaHa06g16000.1
mRNAPaHa06g16000.1
part_ofgenePaHa06g16000
CDS
part_ofPaHa06g16000.1-CDS-6-1787993825:30004081..30005014mRNAPaHa06g16000.1
CDS
part_ofPaHa06g16000.1-CDS-6-1787993825:30005142..30005271mRNAPaHa06g16000.1
CDS
part_ofPaHa06g16000.1-CDS-6-1787993825:30005872..30006010mRNAPaHa06g16000.1
exon
part_ofPaHa06g16000.1-exon-6-1787993825:30004081..30005014mRNAPaHa06g16000.1
exon
part_ofPaHa06g16000.1-exon-6-1787993825:30005142..30005271mRNAPaHa06g16000.1
exon
part_ofPaHa06g16000.1-exon-6-1787993825:30005872..30006010mRNAPaHa06g16000.1
