Feature identity
- Identifier
- Pa12g2317.1
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 915 bp
- Genomic location
- Pa12:47,292,401–47,297,517
- Strand
- +
West Indian T2T · mRNA
Pa12g2317.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 915
- bp
- Pa12:47,292,401–47,297,517
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa12g2317
- eggNOG
- Preferred name: LOC110788135 | Seed ortholog: 337451.A0A3S3PR79 | COG: S | eggNOG OG: AUX_IAA@131567|A-1*, AUX_IAA@2759|BU-8, AUX_IAA@33090|Fw-11, AUX_IAA@3398|de-17
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009733 response to auxin; GO:0009880 embryonic pattern specification; GO:0010051 xylem and phloem pattern formation; GO:0042802 identical protein binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0048364 root development
- KEGG
- KO: K14484 | Pathway: 04075 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa12g2317.1-protein
derives_frommRNAPa12g2317.1
mRNAPa12g2317.1
part_ofgenePa12g2317
exon
part_ofPa12g2317.1:1mRNAPa12g2317.1
exon
part_ofPa12g2317.1:2mRNAPa12g2317.1
exon
part_ofPa12g2317.1:3mRNAPa12g2317.1
exon
part_ofPa12g2317.1:4mRNAPa12g2317.1
exon
part_ofPa12g2317.1:5mRNAPa12g2317.1
CDS
part_ofPa12g2317.1:cdsmRNAPa12g2317.1
