West Indian T2T · gene

Pa12g1951

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,908
bp
Pa12:41,646,294–41,648,201
genomic location
Record overview

Feature identity

Identifier
Pa12g1951
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,908 bp
Genomic location
Pa12:41,646,294–41,648,201
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC103722702 | Seed ortholog: 337451.A0A3S3NPY4 | COG: S | eggNOG OG: zf-CCCH@131567|Abn-26
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening; GO:0000932 P-body; GO:0001570 vasculogenesis; GO:0003342 proepicardium development; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006402 mRNA catabolic process; GO:0006417 regulation of translation; GO:0006915 apoptotic process; GO:0007507 heart development; GO:0008283 cell population proliferation; GO:0009611 response to wounding; GO:0010468 regulation of gene expression; GO:0010494 cytoplasmic stress granule; GO:0010629 negative regulation of gene expression; GO:0010837 regulation of keratinocyte proliferation; GO:0016529 sarcoplasmic reticulum; GO:0019899 enzyme binding; GO:0019901 protein kinase binding; GO:0019957 C-C chemokine binding; GO:0021915 neural tube development; GO:0030014 CCR4-NOT complex; GO:0030097 hemopoiesis; GO:0031072 heat shock protein binding; GO:0031086 nuclear-transcribed mRNA catabolic process, deadenylation-independent decay; GO:0031440 regulation of mRNA 3'-end processing; GO:0032680 regulation of tumor necrosis factor production; GO:0032703 negative regulation of interleukin-2 production; GO:0032869 cellular response to insulin stimulus; GO:0032897 negative regulation of viral transcription; GO:0033077 T cell differentiation in thymus; GO:0035019 somatic stem cell population maintenance; GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing; GO:0035264 multicellular organism growth; GO:0035278 miRNA-mediated gene silencing by inhibition of translation; GO:0035556 intracellular signal transduction; GO:0035925 mRNA 3'-UTR AU-rich region binding; GO:0038066 p38MAPK cascade; GO:0039020 pronephric nephron tubule development; GO:0042594 response to starvation; GO:0043488 regulation of mRNA stability; GO:0043491 phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0044344 cellular response to fibroblast growth factor stimulus; GO:0044877 protein-containing complex binding; GO:0045577 regulation of B cell differentiation; GO:0045599 negative regulation of fat cell differentiation; GO:0045600 positive regulation of fat cell differentiation; GO:0045616 regulation of keratinocyte differentiation; GO:0045638 negative regulation of myeloid cell differentiation; GO:0045647 negative regulation of erythrocyte differentiation; GO:0045657 positive regulation of monocyte differentiation; GO:0045661 regulation of myoblast differentiation; GO:0048103 somatic stem cell division; GO:0048382 mesendoderm development; GO:0048568 embryonic organ development; GO:0048793 pronephros development; GO:0050728 negative regulation of inflammatory response; GO:0050779 RNA destabilization; GO:0051028 mRNA transport; GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; GO:0060216 definitive hemopoiesis; GO:0060710 chorio-allantoic fusion; GO:0060712 spongiotrophoblast layer development; GO:0061014 positive regulation of mRNA catabolic process; GO:0061158 3'-UTR-mediated mRNA destabilization; GO:0070063 RNA polymerase binding; GO:0070371 ERK1 and ERK2 cascade; GO:0070935 3'-UTR-mediated mRNA stabilization; GO:0071222 cellular response to lipopolysaccharide; GO:0071320 cellular response to cAMP; GO:0071356 cellular response to tumor necrosis factor; GO:0071364 cellular response to epidermal growth factor stimulus; GO:0071375 cellular response to peptide hormone stimulus; GO:0071385 cellular response to glucocorticoid stimulus; GO:0071456 cellular response to hypoxia; GO:0071472 cellular response to salt stress; GO:0071560 cellular response to transforming growth factor beta stimulus; GO:0071889 14-3-3 protein binding; GO:0072080 nephron tubule development; GO:0072091 regulation of stem cell proliferation; GO:0097011 cellular response to granulocyte macrophage colony-stimulating factor stimulus; GO:0097403 cellular response to raffinose; GO:0160134 protein-RNA sequence-specific adaptor activity; GO:1900016 negative regulation of cytokine production involved in inflammatory response; GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:1901835 positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA; GO:1901991 negative regulation of mitotic cell cycle phase transition; GO:1902172 regulation of keratinocyte apoptotic process; GO:1904246 negative regulation of polynucleotide adenylyltransferase activity; GO:1904582 positive regulation of intracellular mRNA localization; GO:1904888 cranial skeletal system development; GO:1905869 negative regulation of 3'-UTR-mediated mRNA stabilization; GO:1990904 ribonucleoprotein complex; GO:2000637 positive regulation of miRNA-mediated gene silencing; GO:2000737 negative regulation of stem cell differentiation
KEGG
KO: K18753 | Pathway: 04114, 04218, 05166, 05167 | BRITE: 00001, 03019
Biological context

Connected feature records

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