Feature identity
- Identifier
- Pa12g1629
- Feature type
- gene
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 3,462 bp
- Genomic location
- Pa12:36,804,942–36,808,403
- Strand
- +
West Indian T2T · gene
Pa12g1629
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,462
- bp
- Pa12:36,804,942–36,808,403
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: LOC103716825 | Seed ortholog: 337451.A0A3S3R7S2 | COG: S | eggNOG OG: TAFII55_N@2759|A-1
- Gene Ontology
- GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000296 spermine transport; GO:0000976 transcription cis-regulatory region binding; GO:0001097 TFIIH-class transcription factor complex binding; GO:0003674 molecular_function; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006282 regulation of DNA repair; GO:0006352 DNA-templated transcription initiation; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006469 negative regulation of protein kinase activity; GO:0007286 spermatid development; GO:0008150 biological_process; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0030317 flagellated sperm motility; GO:0030520 estrogen receptor signaling pathway; GO:0035034 histone acetyltransferase regulator activity; GO:0035035 histone acetyltransferase binding; GO:0042789 mRNA transcription by RNA polymerase II; GO:0042809 nuclear vitamin D receptor binding; GO:0045344 negative regulation of MHC class I biosynthetic process; GO:0045347 negative regulation of MHC class II biosynthetic process; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046966 nuclear thyroid hormone receptor binding; GO:0046982 protein heterodimerization activity; GO:0051123 RNA polymerase II preinitiation complex assembly; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0061628 histone H3K27me3 reader activity; GO:0106140 P-TEFb complex binding; GO:0140297 DNA-binding transcription factor binding
- KEGG
- EC: ec:1.14.11.73 | KO: K03132 | Pathway: 03022 | BRITE: 00001, 03021, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPa12g1629.1
part_ofgenePa12g1629
mRNAPa12g1629.2
part_ofgenePa12g1629
