West Indian T2T · gene

Pa12g1181

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

8,557
bp
Pa12:29,377,916–29,386,472
genomic location
Record overview

Feature identity

Identifier
Pa12g1181
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
8,557 bp
Genomic location
Pa12:29,377,916–29,386,472
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LIN28A | Seed ortholog: 4432.A0A1U7Z0X3 | COG: S | eggNOG OG: zf-CCHC@131567|Em-12, zf-CCHC@2759|AOx-21
Gene Ontology
GO:0000151 ubiquitin ligase complex; GO:0000278 mitotic cell cycle; GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0000398 mRNA splicing, via spliceosome; GO:0000932 P-body; GO:0001708 cell fate specification; GO:0002119 nematode larval development; GO:0002151 G-quadruplex RNA binding; GO:0002190 cap-independent translational initiation; GO:0002192 IRES-dependent translational initiation of linear mRNA; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005791 rough endoplasmic reticulum; GO:0005829 cytosol; GO:0006338 chromatin remodeling; GO:0006396 RNA processing; GO:0006417 regulation of translation; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0007281 germ cell development; GO:0007300 ovarian nurse cell to oocyte transport; GO:0007562 eclosion; GO:0007623 circadian rhythm; GO:0008062 eclosion rhythm; GO:0008104 intracellular protein localization; GO:0008150 biological_process; GO:0009792 embryo development ending in birth or egg hatching; GO:0010468 regulation of gene expression; GO:0010494 cytoplasmic stress granule; GO:0010586 miRNA metabolic process; GO:0010587 miRNA catabolic process; GO:0010608 post-transcriptional regulation of gene expression; GO:0010628 positive regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0016607 nuclear speck; GO:0017148 negative regulation of translation; GO:0019827 stem cell population maintenance; GO:0019899 enzyme binding; GO:0030036 actin cytoskeleton organization; GO:0030332 cyclin binding; GO:0031016 pancreas development; GO:0031054 pre-miRNA processing; GO:0031099 regeneration; GO:0031123 RNA 3'-end processing; GO:0031369 translation initiation factor binding; GO:0032008 positive regulation of TOR signaling; GO:0032055 negative regulation of translation in response to stress; GO:0032922 circadian regulation of gene expression; GO:0032991 protein-containing complex; GO:0035198 miRNA binding; GO:0035278 miRNA-mediated gene silencing by inhibition of translation; GO:0035773 insulin secretion involved in cellular response to glucose stimulus; GO:0035883 enteroendocrine cell differentiation; GO:0036002 pre-mRNA binding; GO:0040009 regulation of growth rate; GO:0040034 regulation of development, heterochronic; GO:0042464 dosage compensation by hypoactivation of X chromosome; GO:0042551 neuron maturation; GO:0042593 glucose homeostasis; GO:0042659 regulation of cell fate specification; GO:0042752 regulation of circadian rhythm; GO:0043009 chordate embryonic development; GO:0043153 entrainment of circadian clock by photoperiod; GO:0045475 locomotor rhythm; GO:0045666 positive regulation of neuron differentiation; GO:0045686 negative regulation of glial cell differentiation; GO:0045727 positive regulation of translation; GO:0045804 negative regulation of eclosion; GO:0045947 negative regulation of translational initiation; GO:0045995 regulation of embryonic development; GO:0046626 regulation of insulin receptor signaling pathway; GO:0046685 response to arsenic-containing substance; GO:0046822 regulation of nucleocytoplasmic transport; GO:0048471 perinuclear region of cytoplasm; GO:0048863 stem cell differentiation; GO:0050779 RNA destabilization; GO:0051149 positive regulation of muscle cell differentiation; GO:0051897 positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0060964 regulation of miRNA-mediated gene silencing; GO:0070878 primary miRNA binding; GO:0070883 pre-miRNA binding; GO:0071011 precatalytic spliceosome; GO:0071013 catalytic step 2 spliceosome; GO:0071333 cellular response to glucose stimulus; GO:0097157 pre-mRNA intronic binding; GO:0097158 pre-mRNA intronic pyrimidine-rich binding; GO:0097167 circadian regulation of translation; GO:0140517 protein-RNA adaptor activity; GO:1901724 positive regulation of cell proliferation involved in kidney development; GO:1990715 mRNA CDS binding; GO:1990825 sequence-specific mRNA binding; GO:1990837 sequence-specific double-stranded DNA binding; GO:2000627 positive regulation of miRNA catabolic process; GO:2000632 negative regulation of pre-miRNA processing; GO:2000635 negative regulation of primary miRNA processing; GO:2000767 positive regulation of cytoplasmic translation
KEGG
EC: ec:2.3.2.27 | KO: K13187, K18754 | BRITE: 00001, 03019, 03041
Biological context

Connected feature records

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