PaHa06g13580.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,089: bp
6:22,792,289–22,804,207: genomic location

Record overview

Feature identity

Identifier: PaHa06g13580.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 1,089 bp
Genomic location: 6:22,792,289–22,804,207
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa06g13580

eggNOG: Preferred name: RLT3 | Seed ortholog: 337451.A0A3S3NRS7 | COG: S | eggNOG OG: DDT@131567|B-2!, DDT@33090|y-7, Homeodomain@131567|ED-11, Homeodomain@2759|Fb-12, WHIM1@131567|C-2, WHIM1@33090|DN-10, WSD@131567|A-1*, WSD@33090|Q-5
Gene Ontology: GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000183 rDNA heterochromatin formation; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding; GO:0001671 ATPase activator activity; GO:0001835 blastocyst hatching; GO:0001892 embryonic placenta development; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003723 RNA binding; GO:0004402 histone acetyltransferase activity; GO:0004713 protein tyrosine kinase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006261 DNA-templated DNA replication; GO:0006275 regulation of DNA replication; GO:0006325 chromatin organization; GO:0006334 nucleosome assembly; GO:0006335 DNA replication-dependent chromatin assembly; GO:0006338 chromatin remodeling; GO:0006346 DNA methylation-dependent constitutive heterochromatin formation; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006974 DNA damage response; GO:0007399 nervous system development; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008327 methyl-CpG binding; GO:0010019 chloroplast-nucleus signaling pathway; GO:0010172 embryonic body morphogenesis; GO:0010223 secondary shoot formation; GO:0016479 negative regulation of transcription by RNA polymerase I; GO:0016922 nuclear receptor binding; GO:0019827 stem cell population maintenance; GO:0031445 regulation of heterochromatin formation; GO:0031507 heterochromatin formation; GO:0031509 subtelomeric heterochromatin formation; GO:0031555 transcriptional attenuation; GO:0036268 swimming; GO:0040029 epigenetic regulation of gene expression; GO:0042393 histone binding; GO:0043687 post-translational protein modification; GO:0045740 positive regulation of DNA replication; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045943 positive regulation of transcription by RNA polymerase I; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045945 positive regulation of transcription by RNA polymerase III; GO:0048573 photoperiodism, flowering; GO:0060590 ATPase regulator activity; GO:0071444 cellular response to pheromone; GO:0140002 histone H3K4me3 reader activity; GO:0140046 histone H4K16ac reader activity; GO:0140297 DNA-binding transcription factor binding; GO:0140463 chromatin-protein adaptor activity; GO:0140801 histone H2AXY142 kinase activity; GO:1905213 negative regulation of mitotic chromosome condensation; GO:2000738 positive regulation of stem cell differentiation; GO:2001208 negative regulation of transcription elongation by RNA polymerase I
KEGG: EC: ec:2.3.1.48 | KO: K09307, K09368, K11655, K11658, K11728, K15224, K15607, K18490, K22768, K24893, K26167 | Pathway: 03082 | BRITE: 00001, 01000, 03000, 03021, 03036

Biological context