Feature identity
- Identifier
- PaHa06g12460.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 735 bp
- Genomic location
- 6:20,409,848–20,412,982
- Strand
- −
Hass · mRNA
PaHa06g12460.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 735
- bp
- 6:20,409,848–20,412,982
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g12460
- eggNOG
- Preferred name: LOC104612447 | Seed ortholog: 337451.A0A3S3N5V2 | COG: S | eggNOG OG: AUX_IAA@131567|A-1*, AUX_IAA@2759|YD-16, AUX_IAA@3398|cd-17
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009414 response to water deprivation; GO:0009611 response to wounding; GO:0009630 gravitropism; GO:0009733 response to auxin; GO:0009734 auxin-activated signaling pathway; GO:0009753 response to jasmonic acid; GO:0010102 lateral root morphogenesis; GO:0042802 identical protein binding; GO:0045892 negative regulation of DNA-templated transcription; GO:1900057 positive regulation of leaf senescence
- KEGG
- KO: K14484 | Pathway: 04075 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g12460.1-protein
derives_frommRNAPaHa06g12460.1
mRNAPaHa06g12460.1
part_ofgenePaHa06g12460
CDS
part_ofPaHa06g12460.1-CDS-6-1787993825:20409848..20409977mRNAPaHa06g12460.1
CDS
part_ofPaHa06g12460.1-CDS-6-1787993825:20410655..20410716mRNAPaHa06g12460.1
CDS
part_ofPaHa06g12460.1-CDS-6-1787993825:20411039..20411121mRNAPaHa06g12460.1
CDS
part_ofPaHa06g12460.1-CDS-6-1787993825:20411797..20411978mRNAPaHa06g12460.1
CDS
part_ofPaHa06g12460.1-CDS-6-1787993825:20412705..20412982mRNAPaHa06g12460.1
exon
part_ofPaHa06g12460.1-exon-6-1787993825:20409848..20409977mRNAPaHa06g12460.1
exon
part_ofPaHa06g12460.1-exon-6-1787993825:20410655..20410716mRNAPaHa06g12460.1
exon
part_ofPaHa06g12460.1-exon-6-1787993825:20411039..20411121mRNAPaHa06g12460.1
exon
part_ofPaHa06g12460.1-exon-6-1787993825:20411797..20411978mRNAPaHa06g12460.1
exon
part_ofPaHa06g12460.1-exon-6-1787993825:20412705..20412982mRNAPaHa06g12460.1
