Feature identity
- Identifier
- Pa11g0038
- Feature type
- gene
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 49,202 bp
- Genomic location
- Pa11:1,200,663–1,249,864
- Strand
- +
West Indian T2T · gene
Pa11g0038
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 49,202
- bp
- Pa11:1,200,663–1,249,864
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: TFB1-1 | Seed ortholog: 337451.A0A3S3P278 | COG: S | eggNOG OG: BSD@131567|A-1*, BSD@2759|C-2, PH_TFIIH@2759|A-1
- Gene Ontology
- GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0001111 RNA polymerase II promoter clearance; GO:0001113 transcription open complex formation at RNA polymerase II promoter; GO:0003674 molecular_function; GO:0005634 nucleus; GO:0006281 DNA repair; GO:0006289 nucleotide-excision repair; GO:0006360 transcription by RNA polymerase I; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0009411 response to UV; GO:0009755 hormone-mediated signaling pathway; GO:0045893 positive regulation of DNA-templated transcription; GO:1990830 cellular response to leukemia inhibitory factor
- KEGG
- KO: K03141 | Pathway: 03022, 03420 | BRITE: 00001, 03021, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPa11g0038.1
part_ofgenePa11g0038
