West Indian T2T · gene

Pa08g1005

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

8,675
bp
Pa08:17,702,549–17,711,223
genomic location
Record overview

Feature identity

Identifier
Pa08g1005
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
8,675 bp
Genomic location
Pa08:17,702,549–17,711,223
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC101244115 | Seed ortholog: 542762.A0A4S4F378 | COG: S | eggNOG OG: EF-hand_5@131567|MK-16
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000139 Golgi membrane; GO:0000287 magnesium ion binding; GO:0000325 plant-type vacuole; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0001046 core promoter sequence-specific DNA binding; GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific; GO:0001508 action potential; GO:0001569 branching involved in blood vessel morphogenesis; GO:0001750 photoreceptor outer segment; GO:0001837 epithelial to mesenchymal transition; GO:0001917 photoreceptor inner segment; GO:0003341 cilium movement; GO:0003352 regulation of cilium movement; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity; GO:0004721 phosphoprotein phosphatase activity; GO:0004723 calcium-dependent protein serine/threonine phosphatase activity; GO:0005250 A-type (transient outward) potassium channel activity; GO:0005509 calcium ion binding; GO:0005513 detection of calcium ion; GO:0005515 protein binding; GO:0005516 calmodulin binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005773 vacuole; GO:0005777 peroxisome; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005794 Golgi apparatus; GO:0005795 Golgi stack; GO:0005811 lipid droplet; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005929 cilium; GO:0005930 axoneme; GO:0005955 calcineurin complex; GO:0006402 mRNA catabolic process; GO:0006470 protein dephosphorylation; GO:0006606 protein import into nucleus; GO:0006663 platelet activating factor biosynthetic process; GO:0006813 potassium ion transport; GO:0006814 sodium ion transport; GO:0006874 intracellular calcium ion homeostasis; GO:0006883 intracellular sodium ion homeostasis; GO:0006885 regulation of pH; GO:0006886 intracellular protein transport; GO:0006935 chemotaxis; GO:0006936 muscle contraction; GO:0006970 response to osmotic stress; GO:0007165 signal transduction; GO:0007168 receptor guanylyl cyclase signaling pathway; GO:0007267 cell-cell signaling; GO:0007269 neurotransmitter secretion; GO:0007341 penetration of zona pellucida; GO:0007507 heart development; GO:0007589 body fluid secretion; GO:0007601 visual perception; GO:0007602 phototransduction; GO:0007635 chemosensory behavior; GO:0008016 regulation of heart contraction; GO:0008021 synaptic vesicle; GO:0008048 calcium sensitive guanylate cyclase activator activity; GO:0008076 voltage-gated potassium channel complex; GO:0008150 biological_process; GO:0008284 positive regulation of cell population proliferation; GO:0008287 protein serine/threonine phosphatase complex; GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009536 plastid; GO:0009651 response to salt stress; GO:0009705 plant-type vacuole membrane; GO:0009738 abscisic acid-activated signaling pathway; GO:0009860 pollen tube growth; GO:0010446 response to alkaline pH; GO:0010922 positive regulation of phosphatase activity; GO:0014044 Schwann cell development; GO:0015385 sodium:proton antiporter activity; GO:0015459 potassium channel regulator activity; GO:0016020 membrane; GO:0016036 cellular response to phosphate starvation; GO:0016192 vesicle-mediated transport; GO:0016323 basolateral plasma membrane; GO:0019211 phosphatase activator activity; GO:0019233 sensory perception of pain; GO:0019722 calcium-mediated signaling; GO:0019899 enzyme binding; GO:0019900 kinase binding; GO:0019902 phosphatase binding; GO:0019904 protein domain specific binding; GO:0022011 myelination in peripheral nervous system; GO:0022604 regulation of cell morphogenesis; GO:0022626 cytosolic ribosome; GO:0030007 intracellular potassium ion homeostasis; GO:0030249 guanylate cyclase regulator activity; GO:0030250 guanylate cyclase activator activity; GO:0030317 flagellated sperm motility; GO:0030424 axon; GO:0030425 dendrite; GO:0030431 sleep; GO:0030587 sorocarp development; GO:0031284 positive regulation of guanylate cyclase activity; GO:0031505 fungal-type cell wall organization; GO:0032026 response to magnesium ion; GO:0032153 cell division site; GO:0032993 protein-DNA complex; GO:0033173 calcineurin-NFAT signaling cascade; GO:0034504 protein localization to nucleus; GO:0034976 response to endoplasmic reticulum stress; GO:0036126 sperm flagellum; GO:0036151 phosphatidylcholine acyl-chain remodeling; GO:0036158 outer dynein arm assembly; GO:0036368 photoresponse recovery; GO:0042030 ATPase inhibitor activity; GO:0042307 positive regulation of protein import into nucleus; GO:0042383 sarcolemma; GO:0042538 hyperosmotic salinity response; GO:0042539 hypotonic salinity response; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0043025 neuronal cell body; GO:0043204 perikaryon; GO:0043266 regulation of potassium ion transport; GO:0043523 regulation of neuron apoptotic process; GO:0043565 sequence-specific DNA binding; GO:0043679 axon terminus; GO:0044325 transmembrane transporter binding; GO:0044877 protein-containing complex binding; GO:0045163 clustering of voltage-gated potassium channels; GO:0045202 synapse; GO:0045214 sarcomere organization; GO:0045335 phagocytic vesicle; GO:0045504 dynein heavy chain binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0047144 2-acylglycerol-3-phosphate O-acyltransferase activity; GO:0047159 plasmalogen synthase activity; GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity; GO:0047192 1-alkylglycerophosphocholine O-acetyltransferase activity; GO:0048190 wing disc dorsal/ventral pattern formation; GO:0048265 response to pain; GO:0048266 behavioral response to pain; GO:0048306 calcium-dependent protein binding; GO:0048487 beta-tubulin binding; GO:0050801 monoatomic ion homeostasis; GO:0051321 meiotic cell cycle; GO:0051453 regulation of intracellular pH; GO:0051701 biological process involved in interaction with host; GO:0051924 regulation of calcium ion transport; GO:0055074 calcium ion homeostasis; GO:0055075 potassium ion homeostasis; GO:0060306 regulation of membrane repolarization; GO:0060326 cell chemotaxis; GO:0060487 lung epithelial cell differentiation; GO:0061024 membrane organization; GO:0070370 cellular heat acclimation; GO:0070886 positive regulation of calcineurin-NFAT signaling cascade; GO:0071193 Kv4.2-KChIP2 channel complex; GO:0071277 cellular response to calcium ion; GO:0071466 cellular response to xenobiotic stimulus; GO:0071472 cellular response to salt stress; GO:0071852 fungal-type cell wall organization or biogenesis; GO:0072659 protein localization to plasma membrane; GO:0086009 membrane repolarization; GO:0090406 pollen tube; GO:0090533 cation-transporting ATPase complex; GO:0097225 sperm midpiece; GO:0097226 sperm mitochondrial sheath; GO:0097381 photoreceptor disc membrane; GO:0097720 calcineurin-mediated signaling; GO:0097729 9+2 motile cilium; GO:0098685 Schaffer collateral - CA1 synapse; GO:0098686 hippocampal mossy fiber to CA3 synapse; GO:0098688 parallel fiber to Purkinje cell synapse; GO:0098693 regulation of synaptic vesicle cycle; GO:0098978 glutamatergic synapse; GO:0099149 regulation of postsynaptic neurotransmitter receptor internalization; GO:0099170 postsynaptic modulation of chemical synaptic transmission; GO:0120152 calcium-dependent outer dynein arm binding; GO:0120199 cone photoreceptor outer segment; GO:0120228 outer dynein arm docking complex; GO:0140659 cytoskeletal motor regulator activity; GO:1901317 regulation of flagellated sperm motility; GO:1901379 regulation of potassium ion transmembrane transport; GO:1903764 regulation of potassium ion export across plasma membrane; GO:1903766 positive regulation of potassium ion export across plasma membrane; GO:1905665 positive regulation of calcium ion import across plasma membrane; GO:1905949 negative regulation of calcium ion import across plasma membrane
KEGG
EC: ec:1.8.4.9, ec:2.3.1.23, ec:2.3.1.67, ec:2.7.11.1 | KO: K11583 | Pathway: 03015 | Module: M00176 | BRITE: 00001, 01009, 03019, 03036
Biological context

Connected feature records

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