Feature identity
- Identifier
- PaHa06g03760.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,286 bp
- Genomic location
- 6:5,451,592–5,464,692
- Strand
- +
Hass · mRNA
PaHa06g03760.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,286
- bp
- 6:5,451,592–5,464,692
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g03760
- eggNOG
- Preferred name: LHY | Seed ortholog: 337451.A0A3S3PFH0 | COG: S | eggNOG OG: Myb_DNA-binding@131567|uI-23, Myb_DNA-binding@2759|yY-24, Myb_DNA-binding@3398|DIF-35
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0009409 response to cold; GO:0042752 regulation of circadian rhythm; GO:0042754 negative regulation of circadian rhythm; GO:0048574 long-day photoperiodism, flowering
- KEGG
- EC: ec:3.4.21.102 | KO: K12133 | Pathway: 04712 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g03760.1-protein
derives_frommRNAPaHa06g03760.1
mRNAPaHa06g03760.1
part_ofgenePaHa06g03760
CDS
part_ofPaHa06g03760.1-CDS-6-1787993825:5451592..5451633mRNAPaHa06g03760.1
CDS
part_ofPaHa06g03760.1-CDS-6-1787993825:5451754..5451865mRNAPaHa06g03760.1
CDS
part_ofPaHa06g03760.1-CDS-6-1787993825:5452002..5452063mRNAPaHa06g03760.1
CDS
part_ofPaHa06g03760.1-CDS-6-1787993825:5461931..5462161mRNAPaHa06g03760.1
CDS
part_ofPaHa06g03760.1-CDS-6-1787993825:5462246..5463661mRNAPaHa06g03760.1
CDS
part_ofPaHa06g03760.1-CDS-6-1787993825:5464270..5464692mRNAPaHa06g03760.1
exon
part_ofPaHa06g03760.1-exon-6-1787993825:5451592..5451633mRNAPaHa06g03760.1
exon
part_ofPaHa06g03760.1-exon-6-1787993825:5451754..5451865mRNAPaHa06g03760.1
exon
part_ofPaHa06g03760.1-exon-6-1787993825:5452002..5452063mRNAPaHa06g03760.1
exon
part_ofPaHa06g03760.1-exon-6-1787993825:5461931..5462161mRNAPaHa06g03760.1
exon
part_ofPaHa06g03760.1-exon-6-1787993825:5462246..5463661mRNAPaHa06g03760.1
exon
part_ofPaHa06g03760.1-exon-6-1787993825:5464270..5464692mRNAPaHa06g03760.1
