Feature identity
- Identifier
- PaHa06g02730.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 5,490 bp
- Genomic location
- 6:4,059,968–4,075,849
- Strand
- +
Hass · mRNA
PaHa06g02730.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 5,490
- bp
- 6:4,059,968–4,075,849
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g02730
- eggNOG
- Preferred name: LOC104599474 | Seed ortholog: 337451.A0A443PFP3 | COG: S | eggNOG OG: DDT@131567|B-2!, DDT@33090|x-7, DDT@3398|CF-10, HARE-HTH@131567|A-1, HARE-HTH@3398|Jg-14, Homeodomain@131567|ED-11, Homeodomain@2759|NS-15, Homeodomain@33090|AGU-20, WHIM1@131567|C-2, WHIM1@33090|DO-10, WHIM1@3398|Id-13, WSD@131567|A-1*, WSD@33090|P-5, WSD@3398|Bf-9
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0031010 ISWI-type complex; GO:0045892 negative regulation of DNA-templated transcription
- KEGG
- EC: ec:2.3.1.48 | KO: K09301, K09307, K09320, K09326, K09327, K09364, K09451, K09533, K11655, K11658, K11728, K15224, K22768, K22866, K26167 | Pathway: 03082 | BRITE: 00001, 01000, 03000, 03021, 03036, 03037, 03041, 03110
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g02730.1-protein
derives_frommRNAPaHa06g02730.1
mRNAPaHa06g02730.1
part_ofgenePaHa06g02730
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4059968..4060076mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4060203..4060673mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4061987..4062069mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4062717..4063250mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4063346..4063435mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4063529..4063693mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4063780..4064002mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4065001..4065101mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4065614..4065700mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4065815..4065967mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4066064..4066219mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4066508..4066717mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4066800..4067507mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4067597..4068160mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4070940..4071575mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4071667..4071771mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4073922..4074185mRNAPaHa06g02730.1
CDS
part_ofPaHa06g02730.1-CDS-6-1787993825:4075019..4075849mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4059968..4060076mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4060203..4060673mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4061987..4062069mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4062717..4063250mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4063346..4063435mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4063529..4063693mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4063780..4064002mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4065001..4065101mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4065614..4065700mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4065815..4065967mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4066064..4066219mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4066508..4066717mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4066800..4067507mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4067597..4068160mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4070940..4071575mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4071667..4071771mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4073922..4074185mRNAPaHa06g02730.1
exon
part_ofPaHa06g02730.1-exon-6-1787993825:4075019..4075849mRNAPaHa06g02730.1
