Feature identity
- Identifier
- PaHa06g00540.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,281 bp
- Genomic location
- 6:1,488,292–1,494,306
- Strand
- −
Hass · mRNA
PaHa06g00540.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,281
- bp
- 6:1,488,292–1,494,306
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g00540
- eggNOG
- Preferred name: LOC100808239 | Seed ortholog: 337451.A0A3S3NWH5 | COG: S | eggNOG OG: AAA@131567|Afu-19, AAA@2759|NSR-33, AAA_lid_3@131567|DL-10, AAA_lid_3@2759|Xn-16, AAA_lid_3@3193|NaB-40, AAA_lid_3@33090|Eyw-31
- Gene Ontology
- GO:0000502 proteasome complex; GO:0004175 endopeptidase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0008540 proteasome regulatory particle, base subcomplex; GO:0016887 ATP hydrolysis activity; GO:0017025 TBP-class protein binding; GO:0031625 ubiquitin protein ligase binding; GO:0036402 proteasome-activating activity; GO:0140296 general transcription initiation factor binding
- KEGG
- EC: ec:1.3.5.1 | KO: K03061 | Pathway: 03050 | Module: M00009, M00011, M00148 | BRITE: 00001, 03051
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g00540.1-protein
derives_frommRNAPaHa06g00540.1
mRNAPaHa06g00540.1
part_ofgenePaHa06g00540
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1488292..1488449mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1488700..1488875mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1489135..1489316mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1489465..1489683mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1491527..1491671mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1492137..1492198mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1492291..1492368mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1492458..1492549mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1493517..1493598mRNAPaHa06g00540.1
CDS
part_ofPaHa06g00540.1-CDS-6-1787993825:1494220..1494306mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1488292..1488449mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1488700..1488875mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1489135..1489316mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1489465..1489683mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1491527..1491671mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1492137..1492198mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1492291..1492368mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1492458..1492549mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1493517..1493598mRNAPaHa06g00540.1
exon
part_ofPaHa06g00540.1-exon-6-1787993825:1494220..1494306mRNAPaHa06g00540.1
