Feature identity
- Identifier
- PaHa06g00380.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,365 bp
- Genomic location
- 6:1,213,620–1,217,182
- Strand
- −
Hass · mRNA
PaHa06g00380.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,365
- bp
- 6:1,213,620–1,217,182
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g00380
- eggNOG
- Preferred name: LOC123051871 | Seed ortholog: 337451.A0A443PGC4 | COG: S | eggNOG OG: HLH@131221|BVX-22, HLH@131567|Zg-14!, HLH@3193|CEo-24, HLH@33090|AbI-19, HLH@3398|KBj-34, HLH@35493|AqB-20, HLH@58023|GdY-31
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0009416 response to light stimulus; GO:0009506 plasmodesma; GO:0009567 double fertilization forming a zygote and endosperm; GO:0009637 response to blue light; GO:0009704 de-etiolation; GO:0009753 response to jasmonic acid; GO:0009845 seed germination; GO:0009959 negative gravitropism; GO:0010187 negative regulation of seed germination; GO:0010218 response to far red light; GO:0043565 sequence-specific DNA binding; GO:0090351 seedling development
- KEGG
- KO: K12126 | Pathway: 04075, 04712 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g00380.1-protein
derives_frommRNAPaHa06g00380.1
mRNAPaHa06g00380.1
part_ofgenePaHa06g00380
CDS
part_ofPaHa06g00380.1-CDS-6-1787993825:1213620..1213727mRNAPaHa06g00380.1
CDS
part_ofPaHa06g00380.1-CDS-6-1787993825:1214211..1214546mRNAPaHa06g00380.1
CDS
part_ofPaHa06g00380.1-CDS-6-1787993825:1214637..1214702mRNAPaHa06g00380.1
CDS
part_ofPaHa06g00380.1-CDS-6-1787993825:1215907..1216017mRNAPaHa06g00380.1
CDS
part_ofPaHa06g00380.1-CDS-6-1787993825:1216328..1216973mRNAPaHa06g00380.1
CDS
part_ofPaHa06g00380.1-CDS-6-1787993825:1217085..1217182mRNAPaHa06g00380.1
exon
part_ofPaHa06g00380.1-exon-6-1787993825:1213620..1213727mRNAPaHa06g00380.1
exon
part_ofPaHa06g00380.1-exon-6-1787993825:1214211..1214546mRNAPaHa06g00380.1
exon
part_ofPaHa06g00380.1-exon-6-1787993825:1214637..1214702mRNAPaHa06g00380.1
exon
part_ofPaHa06g00380.1-exon-6-1787993825:1215907..1216017mRNAPaHa06g00380.1
exon
part_ofPaHa06g00380.1-exon-6-1787993825:1216328..1216973mRNAPaHa06g00380.1
exon
part_ofPaHa06g00380.1-exon-6-1787993825:1217085..1217182mRNAPaHa06g00380.1
